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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCGGTGCGATTTCTCCCCAAAACGACGCCGAATTCCCCCACAAACAAGGCTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttccttacatttcaaatgcaattttcgtttatgtttcatgcattggtccaatgcaggattatgcattgctgtgatgcgtgttcactattttcag...

Basic information

species Glycine max
transcript GLYMA08G20450.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151410865|gb|EV280680.1|EV280680
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
EST: gi|298189608|gb|HO038011.1|HO038011
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATTCTATGCTCTTATTCCCCAAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
EST: gi|192329258|gb|FK020177.1|FK020177
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
EST: gi|298164406|gb|HO014051.1|HO014051
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
EST: gi|298198529|gb|HO040068.1|HO040068
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
EST: gi|298197215|gb|HO041958.1|HO041958
EST:     CTTTTTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
EST: gi|193315009|gb|FK282181.1|FK282181
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCA
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCA
EST: gi|18039076|gb|BM307370.1|BM307370
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
EST: gi|207732918|gb|GD713579.1|GD713579
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCTTTTATT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATT
EST: gi|298171332|gb|HO016364.1|HO016364
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
EST: gi|298198894|gb|HO042257.1|HO042257
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCC-AAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
EST: gi|254336366|gb|GR842545.1|GR842545
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
EST: gi|6727191|gb|AW311545.1|AW311545
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
EST: gi|298183003|gb|HO028266.1|HO028266
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
EST: gi|298179849|gb|HO025064.1|HO025064
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCCTTTATTCCCCAAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
EST: gi|298176681|gb|HO026802.1|HO026802
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
EST: gi|298166116|gb|HO009087.1|HO009087
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
EST: gi|298163782|gb|HO012515.1|HO012515
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
EST: gi|192330715|gb|FK021992.1|FK021992
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
EST: gi|298167342|gb|HO010781.1|HO010781
EST:     CTTTCTCTACCCCTGCGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCTCTTATTCCCCAAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
EST: gi|192322712|gb|FK014403.1|FK014403
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
EST: gi|298190374|gb|HO032495.1|HO032495
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCTTTTGTTCCCCAAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
EST: gi|58015666|gb|CX702408.1|CX702408
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
EST: gi|254336365|gb|GR842544.1|GR842544
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
EST: gi|151394308|gb|EV264179.1|EV264179
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
EST: gi|9901265|gb|BE610233.1|BE610233
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
EST: gi|58015436|gb|CX702178.1|CX702178
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
EST: gi|8285980|gb|BE023600.1|BE023600
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
EST: gi|208090434|gb|GD887457.1|GD887457
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGG-CGCTCCTTCATCAGATGATCCTATGCTTTTATT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATT
EST: gi|254343196|gb|GR859358.1|GR859358
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
EST: gi|298194993|gb|HO043521.1|HO043521
EST:     CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAG                         GGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT
genomic: CTTTCTCTACCCCTGTGGCCTCCCCTCTCTCCGCTTCTTCTTACCTCAAGgtacacttcc ... tgttttgcagGGGACGCTCCTTCATCAGATGATCCTATGCTTTTATTCCCCAAAAGAACGT