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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTACAGATCTTCCAAGCTTCAGAGCGCAGGCAAACAACTTCTTCTCAGACATGGCATCTCAAgtaagcctctttctttctctctctgtctctgcaaaatcttcatcttaaaaatcctatcttatgtgctcacaaatcgcaattcaatggccttagctaaata...

Basic information

species Glycine max
transcript GLYMA08G20370.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151407511|gb|EV277326.1|EV277326
EST:     CAAGCTTCAGAGCGCAGGCAAACAACTTCTTCTCAGACATGGCATCTCAA                         GGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
genomic: CAAGCTTCAGAGCGCAGGCAAACAACTTCTTCTCAGACATGGCATCTCAAgtaagcctct ... acacttgtagGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
EST: gi|192330007|gb|FK020823.1|FK020823
EST:     CAAGCTTCAGAGCGCAGGCAAACAACTTCTTCTCAGACATGACATCTCAA                         GGTTTGTGTCCTTCGATAAAAAGTATTCTTCTTTTGGACTCTGAAGGGAAG
genomic: CAAGCTTCAGAGCGCAGGCAAACAACTTCTTCTCAGACATGGCATCTCAAgtaagcctct ... acacttgtagGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
EST: gi|15814159|gb|BI786434.1|BI786434
EST:     TCTTCTCAGACATGGCATCTCAA                         GGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
genomic: TCTTCTCAGACATGGCATCTCAAgtaagcctct ... acacttgtagGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
EST: gi|151400839|gb|EV270653.1|EV270653
EST:     CAAGCTTCAGAGCGCAGGCAAACAACTTCTTCTCAGACATGGCATCTCAA                         GGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
genomic: CAAGCTTCAGAGCGCAGGCAAACAACTTCTTCTCAGACATGGCATCTCAAgtaagcctct ... acacttgtagGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
EST: gi|22523511|gb|BU082322.1|BU082322
EST:     CTTCTTCTCAGACATGGCATCTCAA                         GGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
genomic: CTTCTTCTCAGACATGGCATCTCAAgtaagcctct ... acacttgtagGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
EST: gi|15814245|gb|BI786520.1|BI786520
EST:     TCTTCTCAGACATGGCATCTCAA                         GGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
genomic: TCTTCTCAGACATGGCATCTCAAgtaagcctct ... acacttgtagGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
EST: gi|19053250|gb|BM731917.1|BM731917
EST:     AGCTTCAGAGCGCAGGCAAACAACTTCTTCTCAGACATGGCATCTCAA                         GGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
genomic: AGCTTCAGAGCGCAGGCAAACAACTTCTTCTCAGACATGGCATCTCAAgtaagcctct ... acacttgtagGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
EST: gi|22523391|gb|BU082202.1|BU082202
EST:     CTTCTTCTCAGACATGGCATCTCAA                         GGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
genomic: CTTCTTCTCAGACATGGCATCTCAAgtaagcctct ... acacttgtagGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
EST: gi|192294008|gb|FG987177.1|FG987177
EST:     CAAGCTTCAGAGCGCAGGCAAACAACTTCTTCTCAGACATGGCATCTCAA                         GGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
genomic: CAAGCTTCAGAGCGCAGGCAAACAACTTCTTCTCAGACATGGCATCTCAAgtaagcctct ... acacttgtagGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
EST: gi|10843110|gb|BF066429.1|BF066429
EST:     GCGCAGGCAAACAACTTCTTCTCAGACATGGCATCTCAA                         GGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
genomic: GCGCAGGCAAACAACTTCTTCTCAGACATGGCATCTCAAgtaagcctct ... acacttgtagGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
EST: gi|13252293|gb|BG363196.1|BG363196
EST:     AGCTTCAGAGCGCAGGCAAACAACTTCTTCTCAGACATGGCATCTCAA                         GGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
genomic: AGCTTCAGAGCGCAGGCAAACAACTTCTTCTCAGACATGGCATCTCAAgtaagcctct ... acacttgtagGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
EST: gi|13480157|gb|BG509500.1|BG509500
EST:     CGCAGGCAAACAACTTCTTCTCAGACATGGCATCTCAA                         GGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
genomic: CGCAGGCAAACAACTTCTTCTCAGACATGGCATCTCAAgtaagcctct ... acacttgtagGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTACAGATCTTCCAAGCTTCAGAGCGCAGGCAAACAACTTCTTCTCAGACATGGCATCTCAAgtaagcctctttctttctctctctgtctctgcaaaatcttcatcttaaaaatcctatcttatgtgctcacaaatcgcaattcaatggccttagctaaata

- - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc