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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCGCCTCCCTTTAACTCCACGGTGCAGATCCGAGGAGTTACCCTTTCTTTTCTTTTTTCTTTTTTCTCTTTCCTCATTCTACTTAAAACTCCCACCAGgtatctctctcttttattcctttttaatttcgtaaaacacctgttctgtttctcttctatgaatctggtcttgatctaaatttttttccatcgacccaaa...

Basic information

species Glycine max
transcript GLYMA08G20300.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37997471|gb|CF809060.1|CF809060
EST:     CTCATTCTACTTAAAACTCCCACCAG                         TGATGGCAGGTTTGGCTCCAGAGGGAACACAATTCGATGGTCGCCAATATG
genomic: CTCATTCTACTTAAAACTCCCACCAGgtatctctct ... ctttttgcagTGATGGCAGGTTTGGCTCCAGAGGGAACACAATTCGATGGTCGCCAATATG
EST: gi|192296157|gb|FG989742.1|FG989742
EST:     CTCATTCTACTTAAAACTCCCACCAG                         TGATGGCAGGTTTGGCTCCAGAGGGAACACAATTCGATGGTCGCCAATATG
genomic: CTCATTCTACTTAAAACTCCCACCAGgtatctctct ... ctttttgcagTGATGGCAGGTTTGGCTCCAGAGGGAACACAATTCGATGGTCGCCAATATG
EST: gi|6719017|gb|AW306664.1|AW306664
EST:     CTCATTCTACTTAAAACTCCCACCAG                         TGATGGCAGGTTTGGCTCCAGAGGGAACACAATTCGATGGTCGCCAATATG
genomic: CTCATTCTACTTAAAACTCCCACCAGgtatctctct ... ctttttgcagTGATGGCAGGTTTGGCTCCAGAGGGAACACAATTCGATGGTCGCCAATATG
EST: gi|9820437|gb|BE555947.1|BE555947
EST:     CTCATTCTACTTAAAACTCCCACCAG                         TGATGGCAGGTTTGGCTCCAGAGGGAACACAATTCGATGGTCGCCAATATG
genomic: CTCATTCTACTTAAAACTCCCACCAGgtatctctct ... ctttttgcagTGATGGCAGGTTTGGCTCCAGAGGGAACACAATTCGATGGTCGCCAATATG
EST: gi|6134879|gb|AW133272.1|AW133272
EST:     CTCATTCTACTTAAAACTCCCACCAG                         TGATGGCAGGTTTGGCTCCAGAGGGAACACAATTCGATGGTCGCCAATATG
genomic: CTCATTCTACTTAAAACTCCCACCAGgtatctctct ... ctttttgcagTGATGGCAGGTTTGGCTCCAGAGGGAACACAATTCGATGGTCGCCAATATG
EST: gi|16347160|gb|BI972755.1|BI972755
EST:     CTCATTCTACTTAAAACTCCCACCAG                         TGATGGCAGGTTTGGCTCCAGAGGGAACACAATTCGATGGTCGCCAATATG
genomic: CTCATTCTACTTAAAACTCCCACCAGgtatctctct ... ctttttgcagTGATGGCAGGTTTGGCTCCAGAGGGAACACAATTCGATGGTCGCCAATATG
EST: gi|21995036|gb|BQ786564.1|BQ786564
EST:     CTCATTCTACTTAAAACTCCCACCAG                         TGATGGCAGGTTTGGCTCCAGAGGGAACACAATTCGATGGTCGCCAATATG
genomic: CTCATTCTACTTAAAACTCCCACCAGgtatctctct ... ctttttgcagTGATGGCAGGTTTGGCTCCAGAGGGAACACAATTCGATGGTCGCCAATATG
EST: gi|37994639|gb|CF806304.1|CF806304
EST:     CTCATTCTACTTAAAACTCCCACCAG                         TGATGGCAGGTTTGGCTCCAGAGGGAACACAATTCGATGGTCGCCAATATG
genomic: CTCATTCTACTTAAAACTCCCACCAGgtatctctct ... ctttttgcagTGATGGCAGGTTTGGCTCCAGAGGGAACACAATTCGATGGTCGCCAATATG
EST: gi|9986909|gb|BE661017.1|BE661017
EST:     CTCATTCTACTTAAAACTCCCACCAG                         TGATGGCAGGTTTGGCTCCAGAGGGAACACAATTCGATGGTCGCCAATATG
genomic: CTCATTCTACTTAAAACTCCCACCAGgtatctctct ... ctttttgcagTGATGGCAGGTTTGGCTCCAGAGGGAACACAATTCGATGGTCGCCAATATG