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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTCTGGCTGAGACGCCAACATATTCAGTTGCCTCTGTTGTTACTCTTATGGTCTTTGTTTGCTTCTTGGTTGAGCGTTCAATCTATCGCTTTGGACAGgttaaacactttttcactctttcctttcttgctactagctgctacttgccatcataatataattaacttcaatattaatgccattcattcctatatag

Basic information

species Glycine max
transcript GLYMA08G20120.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20120.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G11000.1 (Arabidopsis thaliana), 5'ss of exon 1
TTCTCTGGCTGAGACGCCAACATATTCAGTTGCCTCTGTTGTTACTCTTATGGTCTTTGTTTGCTTCTTGGTTGAGCGTTCAATCTATCGCTTTGGACAGgttaaacactttttcactctttcctttcttgctactagctgctacttgccatcataatataattaacttcaat--attaatgccattcattcctatatag--
 ||||| || |||||||| || || || ||||| || ||||||||| || ||||||||||||||||  | ||||| ||  | || ||  | |||||| ||||       | |||     |||   ||| ||    |  || |||  ||   |  | | ||  | | ||  ||   || | ||  |   |    | |||    
GTCTCTTGCAGAGACGCCGACTTACTCTGTTGCTTCGGTTGTTACTGTTTTGGTCTTTGTTTGCTTTCTCGTTGAACGCGCCATTTACAGATTTGGAAAGgtgtgtttttgttttgtattttttcttcgtgtgtgtgcctactatatgtt-tgttgaaatgctcagctcaaaagaatgagtgtgaagaacgtat-tatgatt