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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGGAATTGGGAGTGATGGATTTCTCTTCGGTGAGGGCTGCGTTGGATTCGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctatttctacctataatctatttgattgtgttgggctttattttttcattttccttagggtttgtgtttctgattacttcaattcag

Basic information

species Glycine max
transcript GLYMA08G19620.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193352345|gb|FK314319.1|FK314319
EST:     GAAGTCGTACGACAAGGTTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAG
genomic: GAAGTCGTACGACAAGG-TTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAG
EST: gi|22522315|gb|BU081126.1|BU081126
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC