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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAACGAACGCTCAGCTCAGTCCGGTGCCGCCGGCATTCCTCTTTCACGGACTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAACGAGgtactaatgctttccctttttttttctctctcttaatttttaatttcaaaattctctgcattcgccttatttcgttggatcaaacttgtttggcgctgctgccgttcaatccctaaccctaatttgtgttcctttaacaatgtctattgaattgggtgcag

Basic information

species Glycine max
transcript GLYMA08G18970.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298176392|gb|HO023093.1|HO023093
EST:     GACTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAACGAG                         GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
genomic: GACTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAACGAGgtactaatgc ... ttgggtgcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: gi|192331321|gb|FK021018.1|FK021018
EST:     GACTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAACGAG                         GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
genomic: GACTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAACGAGgtactaatgc ... ttgggtgcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: gi|192293827|gb|FG986036.1|FG986036
EST:     GACTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAACGAG                         GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
genomic: GACTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAACGAGgtactaatgc ... ttgggtgcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: gi|151400813|gb|EV270627.1|EV270627
EST:     GACTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAACGAG                         GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
genomic: GACTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAACGAGgtactaatgc ... ttgggtgcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: gi|298164876|gb|HO010873.1|HO010873
EST:     GACTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAACGAG                         GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
genomic: GACTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAACGAGgtactaatgc ... ttgggtgcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: gi|151395650|gb|EV265527.1|EV265527
EST:     GACTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAACGAG                         GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
genomic: GACTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAACGAGgtactaatgc ... ttgggtgcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: gi|209716504|gb|BW653892.1|BW653892
EST:     GACTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAACGAG                         GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
genomic: GACTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAACGAGgtactaatgc ... ttgggtgcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: gi|18039322|gb|BM307616.1|BM307616
EST:     GACTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAACGAG                         GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
genomic: GACTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAACGAGgtactaatgc ... ttgggtgcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: gi|192295486|gb|FG987100.1|FG987100
EST:     GACTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAACGAG                         GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
genomic: GACTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAACGAGgtactaatgc ... ttgggtgcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: gi|192310468|gb|FG999183.1|FG999183
EST:     GACTCATGGAAAACGACGACGTCGACATGCACGCTG-CGACACCAACGAG                         GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
genomic: GACTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAACGAGgtactaatgc ... ttgggtgcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: gi|192310467|gb|FG999182.1|FG999182
EST:     GACTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAACGAG                         GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
genomic: GACTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAACGAGgtactaatgc ... ttgggtgcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: gi|213593154|gb|DB969896.1|DB969896
EST:     GACTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAACGAG                         GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
genomic: GACTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAACGAGgtactaatgc ... ttgggtgcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCAACGAACGCTCAGCTCAGTCCGGTGCCGCCGGCATTCCTCTTTCACGGACTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAACGAGgtactaatgctttccctttttttttctctctcttaatttttaatttcaaaattctctgcattcgccttatttcgttggatcaaacttgtttggcgctgctgccgttcaatccctaaccctaatttgtgttcctttaacaatgtctattgaattgggtgcag

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