Sequence
atgc intronic sequence ATGC exonic sequenceGAGCTTGTGTGTGATTACTTGATGAAGAAGGTGCAACACAATGATTCCCTTCTCTTGATAGATGTTGACCTTAACAAGTGTGAGCCATGGGATATTCCTGgtaagtaatgtagtgcttactctttctcctcatatcatgcattctctaatataaatttaattgttgctttatatgtacatgatgcatctttcttaatttc...
Basic information
species | Glycine max |
transcript | GLYMA08G18470.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G18470.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv19s0027g00230.t01 (Vitis vinifera), 5'ss of exon 1
GAGCTTGTGTGTGATTACTTGATGAAGAAGGTGCAACACAATGATTCCCTTCTCTTGATAGATGTTGACCTTAACAAGTGTGAGCCATGGGATATTCCTGgtaagtaatgtagtgcttactctttctcctcatatcatgcattctctaatataaatttaattgttgctttatatgtacatgatgcatctttcttaatttc-
|||||| | ||||||||| ||||||||||||| | ||| || ||| || || || ||||| || |||||||||||||| ||||||||||||||| ||| | | || | | || | || | ||| || | || || || | | | ||| | || | || |
GAGCTTATATGTGATTACCTGATGAAGAAGGTCACTTCCTCTGAATCTTCTCTGTTCATTGAAGTTGATCTCAACAAGTGTGAGCCTTGGGATATTCCTGgtgagtc-caccctccatatccactatcttgatcatcttcatcttcatcctcatcttctatatttttactgattctgcatattttcatgctcatcatatatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9819410|gb|BE554923.1|BE554923EST: TCTCTTGATAGATGTTGACCTTAACAAGTGTGAGCCATGGGATATTCCTG AAACAGCATGCGTTGGAGGGAAGGAGTGGTATTTCTACACACAAAGAGACC
genomic: TCTCTTGATAGATGTTGACCTTAACAAGTGTGAGCCATGGGATATTCCTGgtaagtaatg ... ggttgtgcagAAACAGCATGCGTTGGAGGGAAGGAGTGGTATTTCTACACACAAAGAGACC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGCTTGTGTGTGATTACTTGATGAAGAAGGTGCAACACAATGATTCCCTTCTCTTGATAGATGTTGACCTTAACAAGTGTGAGCCATGGGATATTCCTGgtaagtaatgtagtgcttactctttctcctcatatcatgcattctctaatataaatttaattgttgctttatatgtacatgatgcatctttcttaatttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttctcc