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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGTTCACATTAAGGGATCGTCTTCTGCAGAAATTTGCGCCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAGgttaaatcattttcctgtcattactcatctttcttcccttattgaccatctattttatgtttttaggaattgttgattaatcgtagttttatgttaattt...

Basic information

species Glycine max
transcript GLYMA08G18240.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207792492|gb|GD763768.1|GD763768
EST:     CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGGGCTAAG                         ATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
genomic: CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAGgttaaatcat ... gttcatgcagATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
EST: gi|208293071|gb|GE089895.1|GE089895
EST:     CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAG                         ATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
genomic: CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAGgttaaatcat ... gttcatgcagATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
EST: gi|17023024|gb|BM094058.1|BM094058
EST:     CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAG                         ATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
genomic: CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAGgttaaatcat ... gttcatgcagATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
EST: gi|17023965|gb|BM094999.1|BM094999
EST:     CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAG                         ATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
genomic: CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAGgttaaatcat ... gttcatgcagATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
EST: gi|7478465|gb|AW666276.1|AW666276
EST:     GAGACTTCTCGTTTATGATGAGAGCTAAG                         ATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
genomic: GAGACTTCTCGTTTATGATGAGAGCTAAGgttaaatcat ... gttcatgcagATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
EST: gi|209708854|gb|BW673890.1|BW673890
EST:     CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAG                         ATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
genomic: CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAGgttaaatcat ... gttcatgcagATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
EST: gi|213606648|gb|DB959060.1|DB959060
EST:     CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAG                         ATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
genomic: CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAGgttaaatcat ... gttcatgcagATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
EST: gi|193425501|gb|FK389978.1|FK389978
EST:     CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAG                         ATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
genomic: CCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAGgttaaatcat ... gttcatgcagATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
EST: gi|23727056|gb|BU761544.1|BU761544
EST:     AGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAG                         ATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
genomic: AGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAGgttaaatcat ... gttcatgcagATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
EST: gi|193667049|gb|FK612549.1|FK612549
EST:     CGTGAGAGACTTCTCGTTTATGATGAGAGCTAAG                         ATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
genomic: CGTGAGAGACTTCTCGTTTATGATGAGAGCTAAGgttaaatcat ... gttcatgcagATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
EST: gi|15663764|gb|BI701135.1|BI701135
EST:     GCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAG                         ATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA
genomic: GCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAGgttaaatcat ... gttcatgcagATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAGTTCACATTAAGGGATCGTCTTCTGCAGAAATTTGCGCCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAGgttaaatcattttcctgtcattactcatctttcttcccttattgaccatctattttatgtttttaggaattgttgattaatcgtagttttatgttaattt

- - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcttccc