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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTCTCACACACACCACTTTATATACCCACGCAATAGAAGGGAGTGCTACTCTCTTCGCCGCTCTCTCTCTCCTTCTCGCTCTTTCAGgttcggttcctctctgcctctaatttttcactcgcttttcctttgcttctttgtttccgaaacgatcggtacctttggtttttctctcttccgtttatta...

Basic information

species Glycine max
transcript GLYMA08G18110.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209716827|gb|BW654346.1|BW654346
EST:     GCCGCTCTCTCTCTCCTTCTCGCTCTTTCAG                         CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
genomic: GCCGCTCTCTCTCTCCTTCTCGCTCTTTCAGgttcggttcc ... aatttttcagCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
EST: gi|33390610|gb|CA853805.1|CA853805
EST:     CTCTCCTTCTCGCTCTTTCAG                         CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
genomic: CTCTCCTTCTCGCTCTTTCAGgttcggttcc ... aatttttcagCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
EST: gi|7684880|gb|AW755528.1|AW755528
EST:     TCTCTCCTTCTCGCTCTTTCAG                         CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
genomic: TCTCTCCTTCTCGCTCTTTCAGgttcggttcc ... aatttttcagCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
EST: gi|120529990|gb|EH258124.1|EH258124
EST:     CTCTCTCCTTCTCGCTCTTTCAG                         CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
genomic: CTCTCTCCTTCTCGCTCTTTCAGgttcggttcc ... aatttttcagCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
EST: gi|254325442|gb|GR838323.1|GR838323
EST:     CTCGCTCTTTCAG                         CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
genomic: CTCGCTCTTTCAGgttcggttcc ... aatttttcagCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
EST: gi|5605835|gb|AI899933.1|AI899933
EST:     TCTCCTTCTCGCTCTTTCAG                         CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
genomic: TCTCCTTCTCGCTCTTTCAGgttcggttcc ... aatttttcagCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
EST: gi|14259251|gb|BG882159.1|BG882159
EST:     CTCCTTCTCGCTCTTTCAG                         CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
genomic: CTCCTTCTCGCTCTTTCAGgttcggttcc ... aatttttcagCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
EST: gi|209701834|gb|BW661327.1|BW661327
EST:     GCCGCTCTCTCTCTCCTTCTCGCTCTTTCAG                         CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
genomic: GCCGCTCTCTCTCTCCTTCTCGCTCTTTCAGgttcggttcc ... aatttttcagCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
EST: gi|254342547|gb|GR858709.1|GR858709
EST:     CTCTCTCTCTCCTTCTCGCTCTTTCAG                         CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
genomic: CTCTCTCTCTCCTTCTCGCTCTTTCAGgttcggttcc ... aatttttcagCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
EST: gi|254342212|gb|GR853349.1|GR853349
EST:     CGCTCTCTCTCTCCTTCTCGCTCTTTCAG                         CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
genomic: CGCTCTCTCTCTCCTTCTCGCTCTTTCAGgttcggttcc ... aatttttcagCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
EST: gi|22931766|gb|BU548905.1|BU548905
EST:     CTCCTTCTCGCTCTTTCAG                         CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
genomic: CTCCTTCTCGCTCTTTCAGgttcggttcc ... aatttttcagCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
EST: gi|6454158|gb|AW184906.1|AW184906
EST:     TCTCCTTCTCGCTCTTTCAG                         CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG
genomic: TCTCCTTCTCGCTCTTTCAGgttcggttcc ... aatttttcagCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCTCTCACACACACCACTTTATATACCCACGCAATAGAAGGGAGTGCTACTCTCTTCGCCGCTCTCTCTCTCCTTCTCGCTCTTTCAGgttcggttcctctctgcctctaatttttcactcgcttttcctttgcttctttgtttccgaaacgatcggtacctttggtttttctctcttccgtttatta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctctc
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