1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAGACGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCCGCACCGATGgtctctgctccattctcaatttttcctttttattgattttatttttgaaagaatgatttcctttgcattgttcatagtgttttattttttacaatggaat...
species | Glycine max |
transcript | GLYMA08G17000.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCCGCACCGATG GTATTTACATAATTAACCTTGGAAAGACATGGGAGAAGCTTCAGCTTGCTGEST: gi|24205688|gb|BU964941.1|BU964941
genomic: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCCGCACCGATGgtctctgctc ... tttttttcagGTATTTACATAATTAACCTTGGAAAGACATGGGAGAAGCTTCAGCTTGCTG
EST: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCCGCACCGATG GTATTTACATAATTAACCTTGGAAAGACATGGGAGAAGCTTCAGCTTGCTGEST: gi|37996268|gb|CF807857.1|CF807857
genomic: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCCGCACCGATGgtctctgctc ... tttttttcagGTATTTACATAATTAACCTTGGAAAGACATGGGAGAAGCTTCAGCTTGCTG
EST: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCCGCACCGATG GTATTTACATAATTAACCTTGGAAAGACATGGGAGAAGCTTCAGCTTGCTGEST: gi|22541501|gb|BU091344.1|BU091344
genomic: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCCGCACCGATGgtctctgctc ... tttttttcagGTATTTACATAATTAACCTTGGAAAGACATGGGAGAAGCTTCAGCTTGCTG
EST: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCCGCACCGATG GTATTTACATAATTAACCTTGGAAAGACATGGGAGAAGCTTCAGCTTGCTGEST: gi|7232750|gb|AW568103.1|AW568103
genomic: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCCGCACCGATGgtctctgctc ... tttttttcagGTATTTACATAATTAACCTTGGAAAGACATGGGAGAAGCTTCAGCTTGCTG
EST: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCCGCACCGATG GTATTTACATAATTAACCTTGGAAAGACATGGGAGAAGCTTCAGCTTGCTGEST: gi|298194300|gb|HO040948.1|HO040948
genomic: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCCGCACCGATGgtctctgctc ... tttttttcagGTATTTACATAATTAACCTTGGAAAGACATGGGAGAAGCTTCAGCTTGCTG
EST: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCCGCACCGATG GTATTTACATAATTAACCTTGGAAAGACATGGGAGAAGCTTCAGCTTGCTGEST: gi|151405528|gb|EV275342.1|EV275342
genomic: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCCGCACCGATGgtctctgctc ... tttttttcagGTATTTACATAATTAACCTTGGAAAGACATGGGAGAAGCTTCAGCTTGCTG
EST: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCCGCACCGATG GTATTTACATAATTAACCTTGGAAAGACATGGGAGAAGCTTCAGCTTGCTGEST: gi|22540179|gb|BU090022.1|BU090022
genomic: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCCGCACCGATGgtctctgctc ... tttttttcagGTATTTACATAATTAACCTTGGAAAGACATGGGAGAAGCTTCAGCTTGCTG
EST: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCCGCACCGATG GTATTTACATAATTAACCTTGGAAAGACATGGGAGAAGCTTCAGCTTGCTG
genomic: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCCGCACCGATGgtctctgctc ... tttttttcagGTATTTACATAATTAACCTTGGAAAGACATGGGAGAAGCTTCAGCTTGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGACGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCCGCACCGATGgtctctgctccattctcaatttttcctttttattgattttatttttgaaagaatgatttcctttgcattgttcatagtgttttattttttacaatggaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA