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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTGTTTAGTTCCAATTCAGGTACTTTTGAAACTTTGAGTTACAGCATGTATGCAGCAATCTTCAATGTGGGCTGGGCCGCTACTCAGGTTTCACACATgtaataatttcctctgattcatcttttccatttgatgctgaaaattaaaaccataagtttgaatgtcaaattagaagtggttggctggtttggttactta...

Basic information

species Glycine max
transcript GLYMA08G16870.4
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G16870.4 (Glycine max), 5'ss of exon 1
lower sequence: AT2G44280.1 (Arabidopsis thaliana), 5'ss of exon 3
AACTGTTTAGTTCCAATTCAGGTACTTTTGAAACTTTGAGTTACAGCATGTATGCAGCAATCTTCAATGTGGGCTGGGCCGCTACTCAGGTTTCACACATgtaataatttcctctgattcatcttttccatttgatgctgaaaattaaaaccataagtttgaat-gtcaaattagaagtggttggctggtttg---gttactta-
 |||  |   |   || ||    ||| | ||||| ||    ||||| |||| |||||| ||||||||| | || ||||| |||||||||||||| ||||||||| |   || |    ||| |   ||  || |    ||  | |||||   || |||||| |   || | ||    | |  |||  |  | |    |||  ||| 
CACTCCTCCATAATAACTCTTCAACTATCGAAACATTATCGTACAGTATGTTTGCAGCTATCTTCAATATTGGATGGGCTGCTACTCAGGTTTCTCACATgtaaaacaatctttc--ttctttcatttgatctt-ccctttagattaatctca-aagtttaatcagtgagatgttcattttttgcataatctttatgttctttag

upper sequence: GLYMA08G16870.4 (Glycine max), 5'ss of exon 1
lower sequence: Vv13s0156g00080.t01 (Vitis vinifera), 5'ss of exon 5
AACTGTTTAGTTCCAATTCAGGTACTTTTGAAACTTTGAGTTACAGCATGTATGCAGCAATCTTCAATGTGGGCTGGGCCGCTACTCAGGTTTCACACATgtaataa--tttcctctgattcatcttttccatttgatgctgaaaattaaaacc--ataagtttgaatgtcaaattagaagtggttggctggtttggttactta------------------------------------------------------------------------------------
|| | ||| |||||||||||   || ||  ||||| |  | |||||||||| ||| ||||||||||||||||||||||| |||||||| |||||||||||||||| |   ||| || | | || |   |  |     ||    |  || || |   | |    |||| | ||   | |   |      ||  ||  |||  ||                                                                                     
AAATTTTTGGTTCCAATTCATCCACGTTGCAAACTGTTGGGTACAGCATGTTTGCCGCAATCTTCAATGTGGGCTGGGCTGCTACTCAAGTTTCACACATgtaatgaaccttcttcagctacaccaagttaaaaaagtgtcatagttttaagcttaagagagatgaaaggcaccattgtgcttacgttcttcttcagtttttttttgttatccccatgttttgggagaaagagggctctgtcattggacatatttatctaatatgaaccacaattgctcttgttgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18041179|gb|BM309473.1|BM309473
EST:     TATGCAGCAATCTTCAATGTGGGCTGGGCCGCTACTCAGGTTTCACACAT                         GTCCATGGTGAGT
genomic: TATGCAGCAATCTTCAATGTGGGCTGGGCCGCTACTCAGGTTTCACACATgtaataattt ... tcttttgaagGTCCATGGTGAGT
EST: gi|6667043|gb|AW278502.1|AW278502
EST:     TATGCAGCAATCTTCAATGTGGGCTGGGCCGCTACTCAGGTTTCACACAT                         GTCCATGGTGAGTTGCATCACGCTGAACTCTACAAGCAGAGTGGCACTGGC
genomic: TATGCAGCAATCTTCAATGTGGGCTGGGCCGCTACTCAGGTTTCACACATgtaataattt ... tcttttgaagGTCCATGGTGAGTTGCATCACGCTGAACTCTACAAGCAGAGTGGCACTGGC
EST: gi|18040825|gb|BM309119.1|BM309119
EST:     TATGCAGCAATCTTCAATGTGGGCTGGGCCGCTACTCAGGTTTCACACAT                         GTCCATGGTGAGTTGCATCACGCTGAACTCTACAAGCAGAGTGGCACTGGC
genomic: TATGCAGCAATCTTCAATGTGGGCTGGGCCGCTACTCAGGTTTCACACATgtaataattt ... tcttttgaagGTCCATGGTGAGTTGCATCACGCTGAACTCTACAAGCAGAGTGGCACTGGC