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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTCGATCATCACAAAGCACCGAGTCATCTGAAAAAGCAACCTTCAATGATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACATgtaagtgctttttccctctttcatttctcttccttcattaaaaacaggaaaatgatataccaccgtatattatgtatgtctatgtggagcgtgtgtgcat...

Basic information

species Glycine max
transcript GLYMA08G15050.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401642|gb|EV271455.1|EV271455
EST:     GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACAT                         AAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGAGA
genomic: GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACATgtaagtgctt ... tgttgtgcagAAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAG-GA
EST: gi|213617389|gb|DB972943.1|DB972943
EST:     GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACAT                         AAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
genomic: GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACATgtaagtgctt ... tgttgtgcagAAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
EST: gi|254318272|gb|GR832440.1|GR832440
EST:     GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACAT                         AAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
genomic: GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACATgtaagtgctt ... tgttgtgcagAAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
EST: gi|192301340|gb|FG994048.1|FG994048
EST:     GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACAT                         AAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
genomic: GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACATgtaagtgctt ... tgttgtgcagAAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
EST: gi|254315885|gb|GR825694.1|GR825694
EST:     GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACAT                         AAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
genomic: GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACATgtaagtgctt ... tgttgtgcagAAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
EST: gi|254318273|gb|GR832441.1|GR832441
EST:     TCAGTACTGGTGC-ACCTCTAAG-ATAAT-ACAT                         AAACTGCAAAAATGGGATTAATG-AAACAAAGGTGGAGTGGGTCCAAGGAT
genomic: TCAGTACTGGTGCAACCTCTAAGAATAATAACATgtaagtgctt ... tgttgtgcagAAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
EST: gi|16104910|gb|BI892650.1|BI892650
EST:     GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACAT                         AAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
genomic: GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACATgtaagtgctt ... tgttgtgcagAAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
EST: gi|151406420|gb|EV276235.1|EV276235
EST:     GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACAT                         AAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
genomic: GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACATgtaagtgctt ... tgttgtgcagAAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
EST: gi|213592560|gb|DB961820.1|DB961820
EST:     GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACAT                         AAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
genomic: GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACATgtaagtgctt ... tgttgtgcagAAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
EST: gi|23060992|gb|BU578439.1|BU578439
EST:     GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACAT                         AAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
genomic: GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACATgtaagtgctt ... tgttgtgcagAAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
EST: gi|120531921|gb|EH260054.1|EH260054
EST:     GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACAT                         AAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
genomic: GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACATgtaagtgctt ... tgttgtgcagAAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
EST: gi|17519034|gb|BM188076.1|BM188076
EST:     GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACAT                         AAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
genomic: GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACATgtaagtgctt ... tgttgtgcagAAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
EST: gi|21285762|gb|BQ473633.1|BQ473633
EST:     GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACAT                         AAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
genomic: GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACATgtaagtgctt ... tgttgtgcagAAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
EST: gi|58018255|gb|CX704997.1|CX704997
EST:     GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACAT                         AAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
genomic: GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACATgtaagtgctt ... tgttgtgcagAAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
EST: gi|15203563|gb|BI426331.1|BI426331
EST:     GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACAT                         AAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
genomic: GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACATgtaagtgctt ... tgttgtgcagAAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
EST: gi|254329256|gb|GR833628.1|GR833628
EST:     GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACAT                         AAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT
genomic: GATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACATgtaagtgctt ... tgttgtgcagAAACTGCAAAAATGGGATTAATGAAAACAAAGGTGGAGTGGGTCCAAGGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTCTCGATCATCACAAAGCACCGAGTCATCTGAAAAAGCAACCTTCAATGATGCCACTCACGGATTCAGTACTGGTGCAACCTCTAAGAATAATAACATgtaagtgctttttccctctttcatttctcttccttcattaaaaacaggaaaatgatataccaccgtatattatgtatgtctatgtggagcgtgtgtgcat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatga