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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACGTTGGTTCGTTTCTGCAGAAATGGGGAATAACAGACAAAGGAGATTCAGAACTCATCGCGCACAATCAAGTCGACACCACCACCAACAACTCTTACTgtaacttctttcccactacttaatgctttcgagtttttattcctatttacgcggctctgctttgcttatttatctaactctacttctacttcag

Basic information

species Glycine max
transcript GLYMA08G14780.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192331293|gb|FK021004.1|FK021004
EST:     AGAACTCATCGCGCACAATCAAGTCGACACCACCACCAACAACTCTTACT                         AGAGGACGATTCTCAAAGCTCTCTTCCAG
genomic: AGAACTCATCGCGCACAATCAAGTCGACACCACCACCAACAACTCTTACTgtaacttctt ... tctacttcagAGAGGACGATTCTCAAAGCTCTCTTCCAG
EST: gi|298182193|gb|HO026368.1|HO026368
EST:     AGAACTCATCGCGCACAATCAAGTCGACACCACCACCAACAACTCTTACT                         AGAGGACGATTCTCAAAGCTCTCTTCCAG
genomic: AGAACTCATCGCGCACAATCAAGTCGACACCACCACCAACAACTCTTACTgtaacttctt ... tctacttcagAGAGGACGATTCTCAAAGCTCTCTTCCAG
EST: gi|298192264|gb|HO036346.1|HO036346
EST:     AGAACTCATCGCGCACAATCAAGTCGACACCACCACCAACAACTCTTACT                         AGAGGACGATTCTCAAAGCTCTCTTCCAG
genomic: AGAACTCATCGCGCACAATCAAGTCGACACCACCACCAACAACTCTTACTgtaacttctt ... tctacttcagAGAGGACGATTCTCAAAGCTCTCTTCCAG
EST: gi|192331184|gb|FK020951.1|FK020951
EST:     AGAACTCATCGCGCACAATCAAGTCGACACCACCACCAACAACTCTTACT                         AGAGGACGATTCTCAAAGCTCTCTT-C--
genomic: AGAACTCATCGCGCACAATCAAGTCGACACCACCACCAACAACTCTTACTgtaacttctt ... tctacttcagAGAGGACGATTCTCAAAGCTCTCTTCCAG
EST: gi|298191659|gb|HO039138.1|HO039138
EST:     AGAACTCATCGCGCACAATCAAGTCGACACCACCACCAACAACTCTTACT                         AGAGGACGATTCTCAAAGCTCTCTTCCAG
genomic: AGAACTCATCGCGCACAATCAAGTCGACACCACCACCAACAACTCTTACTgtaacttctt ... tctacttcagAGAGGACGATTCTCAAAGCTCTCTTCCAG
EST: gi|192327943|gb|FK022474.1|FK022474
EST:     AGAACTCATCGCGCACAATCAAGTCGACACCACCACCAACAACTCTTACT                         AGAGGACGATTCTCAAAGCTCTCTT-C--
genomic: AGAACTCATCGCGCACAATCAAGTCGACACCACCACCAACAACTCTTACTgtaacttctt ... tctacttcagAGAGGACGATTCTCAAAGCTCTCTTCCAG
EST: gi|298177830|gb|HO027383.1|HO027383
EST:     AGAACTCATCGCGCACAATCAAGTCGACACCACCACCAACAACTCTTACT                         AGAGGATGATTCTCAAAGCTCTCTTCCAG
genomic: AGAACTCATCGCGCACAATCAAGTCGACACCACCACCAACAACTCTTACTgtaacttctt ... tctacttcagAGAGGACGATTCTCAAAGCTCTCTTCCAG
EST: gi|298178454|gb|HO024189.1|HO024189
EST:     AGAACTCATCGCGCACAATCAAGTCGACACCACCACCAACAACTCTTACT                         AGAGGACGATTCTCAAAGCTCTCTT-C--
genomic: AGAACTCATCGCGCACAATCAAGTCGACACCACCACCAACAACTCTTACTgtaacttctt ... tctacttcagAGAGGACGATTCTCAAAGCTCTCTTCCAG
EST: gi|298194036|gb|HO040684.1|HO040684
EST:     AGAACTCATCGCGCACAATCAAGTCGACACCACCACCAACAACTCTTACT                         AGAGGACGATTCTCAAAGCTCTCTTCCAG
genomic: AGAACTCATCGCGCACAATCAAGTCGACACCACCACCAACAACTCTTACTgtaacttctt ... tctacttcagAGAGGACGATTCTCAAAGCTCTCTTCCAG