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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTGTTCACGAGAACAATAATGGCACTTATCAGTGGGTTGTCAAGCCCAAAACTGTCAAATATGAATTTAAAACCAACACCCATGTCCCTAAACTAGGgttagtacgttctcatgtcctcctccccttagttacccttaatagtttgaatgtatattcttttgaattttatttttattttttccatcttttattttattgctttgttgatatggtttctttgttgtctgctag

Basic information

species Glycine max
transcript GLYMA08G14670.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G14670.3 (Glycine max), 5'ss of exon 1
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 1
AACTTGTTCACGAGAACAATAATGGCACTTATCAGTGGGTTGTCAAGCCCAAAACTGTCAAATATGAATTTAAAACCAACACCCATGTCCCTAAACTAGGgttagtacgttctcatgtcctcctccccttagttacccttaatagtttgaatgtatattcttttgaattttatttttattttttccatcttttattttattgctttgttgatatggtttctttgttgtctgctag
| |||||||| |||||||  |||||||| || || ||||||||||||||||| || |||||||||||||| |  ||| |  |||||||||| || |||||||| | |  ||  ||  |     ||     | ||  ||||     ||||| | |  ||  ||  |||||  |||| | |||||  |                                                 
AGCTTGTTCATGAGAACAGGAATGGCACCTACCAATGGGTTGTCAAGCCCAAGACCGTCAAATATGAATTCAGGACCGATGCCCATGTCCCCAAGCTAGGgttggcatcttaacaactgtgtttctttccaattttcctt-----tttgattttccatgtttccgaattg-atttctgtttttgactag----------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208120789|gb|GD917532.1|GD917532
EST:     AAAACTGTCAAATATGAATTTAAAACCAACACCCATGTCCCTAAACTAGG                         GGTAATGCTTGT
genomic: AAAACTGTCAAATATGAATTTAAAACCAACACCCATGTCCCTAAACTAGGgttagtacgt ... tgtctgctagGGTAATGCTTGT