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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATATGGAACTACGTCGTCACGGCTCACAAGCCCACCAACGTCACCCACTCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGCgtatctactcattctctttccttttcctagggttcctttcttctctttcattttcatctccacttatttaccctttcacttcgtttttcttccag

Basic information

species Glycine max
transcript GLYMA08G13680.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13680.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os05g51480.1 (Oryza sativa), 5'ss of exon 1
CTATATGGAACTACGTCGTCACGGCTCACAAGCCCACCAACGTCACCCACTCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGCgtatctactcattctctttccttttcctagggttcctttcttctctttcattttcatctccacttatttaccctttcacttcgtttttcttccag----------
   | |||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||| |||||| | ||  |  | ||||| |||||| ||||||   || ||  |  |   | |  |||       ||| ||  |      || |     |   ||   | || |   | |     |   | ||  |          
GCGTGTGGAACTACGTCGTGACGGCGCACAAGCCCACCAGCGTCACCCACTCCTGCGTCGGCAACTTCACCGGCCCCAACCAGCTCAACCTCATCGTCGCgtccgtaatctattccccccttcctccc-----ccctctcgccctccaaatctagggttttgctgcgtcactcccactcccgcctccccctcggggtcgggatcg

upper sequence: GLYMA08G13680.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G402002_T01 (Zea mays), 5'ss of exon 1
CTATATGGAACTACGTCGTCACGGCTCACAAGCCCACCAACGTCACCCACTCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGCgta--tctactcattctctttccttttcctagggttcctttcttctctttcattttcatctccact-tattta--ccctttcacttcgtttttcttccag
   | |||||||||||||||||||| ||||||||||||| ||||| |||||||||||| ||||| || ||||| ||  |  | ||||| || || ||||||||  ||  ||| | ||   || | | |||   |        |     |    || |  |||||   | || |  |||||    || |    | |    |
GCGTGTGGAACTACGTCGTCACGGCGCACAAGCCCACCAGCGTCAGCCACTCCTGCGTAGGCAACTTTACCAGCCCCAACCAGCTCAACCTTATTATCGCgtaaatcccctcctccttcgtcttctccctctcgccgtacgatctaactcggcttgctgctccaaaatgttcaaacccttgagattgggcgctttgtggg

upper sequence: GLYMA08G13680.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G05420.1 (Arabidopsis thaliana), 5'ss of exon 1
CTATATGGAACTACGTCGTCACGGCTCACAAGCCCACCAACGTCACCCACTCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGCgtatctactcattctctttccttttcctagggttcctttcttctctttcattttcatctccacttatttac--cctttcacttcgttttt---cttccag-
    |||||||||||| || ||||||||||| || ||||  ||||| ||||| ||||| ||||| ||||| ||||||||||| |||||||||||  ||||||| | |  |  || |  | | | |  | |   ||  || || | | ||| ||    | |   | | || |  |  || | || | |||     || ||  
GCTCATGGAACTACGTTGTTACGGCTCACAAACCGACCAGTGTCACTCACTCGTGCGTTGGCAACTTCACAAGTCCTCAAGAGCTCAATCTCATTGTCGCgta-cgaaactctccccctacctctatttgttatcaatttttgtttgtcaattagtccccttttgaattgcagctgttgatttgggtttagggttttcaat

upper sequence: GLYMA08G13680.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G21100.1 (Arabidopsis thaliana), 5'ss of exon 1
CTATATGGAACTACGTCGTCACGGCTCACAAGCCCACCAACGTCACCCACTCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGCgtatctactcattctctttccttttcctagggttcctttcttctctttcattttcatctccacttatttaccctttcacttcgtttttcttccag--------
   |||||||||||| ||| |||||||| || || |||   ||||| ||||| |||||||| || ||||| ||||||||||| |||||||||||  | |||||| ||      |||| |||||||  |    ||| || |||   | ||    |  | |      || |    ||    ||     |||||            
GCGTATGGAACTACGCCGTTACGGCTCAGAAACCGACCTGTGTCACTCACTCTTGCGTCGGGAACTTCACAAGTCCTCAAGAACTCAATCTCATTGTTGCgtatgtaacttcgctctatcctttttttt---ttctttcctttgttgtctacctattgtgtgtagatgttaatttggggtttagggttcttaggaaagctagt

upper sequence: GLYMA08G13680.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 1
CTATATGGAACTACGTCGTCACGGCTCACAAGCCCACCAACGTCACCCACTCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGCgtatctact-cattctctttccttttcctagggttcctttcttctctttcattttcatctccacttatttaccctt-tcacttcgtttttctt-ccag-----
   | ||||| || || || |||||||||||||||||||| || || |||||||||||||||||||||||  | ||||| || ||||| |||||||| |||||| || | |||| |  || || ||| |     || ||   | |   |   ||   | ||   || ||  || || |||   |        | | ||     
GCGTGTGGAATTATGTTGTTACGGCTCACAAGCCCACCAATGTTACGCACTCCTGCGTCGGCAATTTCACTGGCCCTCAGGAGCTCAACCTCATCATTGCgtatgtattgcatttttctttctattcttt---ctctttgtgtgtgaatgtgttaggtttctctttgttggccattctcatgccaagaaaaatgctagggttt

upper sequence: GLYMA08G13680.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S458_4V6.1 (Physcomitrella patens), 5'ss of exon 1
CTATATGGAACTACGTCGTCACGGCTCACAAGCCCACCAACGTCACCCACTCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGCgtatctactcattctctttccttttcctagggttcctttcttctctttcattt-tcatctccacttatttaccctttcacttcgtttttcttccag----
 |   ||||| || || || ||||| |||||||||||||| || || || || ||||||||  | ||||| | ||| || || |||||||| |||||||||||||   |  ||| | ||  | |  | || ||     |||  |  |   ||  | |     | |||       ||  || | |||||      |     
GTGGCTGGAATTATGTAGTTACGGCGCACAAGCCCACCAATGTGACGCATTCGTGCGTCGGTTACTTCACTAATCCGCAGGAGCTCAATCTTATCATCGCgtatcctttttttcccctttttctcacgagagtcttcatctctttgtattttggtgagtgaaaattacgatggtttatacatagttttgtggttatgctt

upper sequence: GLYMA08G13680.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ30457 (Selaginella moellendorffii), 5'ss of exon 1
CTATATGGAACTACGTCGTCACGGCTCACAAGCCCACCAACGTCACCCACTCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGCgtatctactcattctctttccttttcctagggttcctttcttctctttcattttcatctccacttatttaccctttcacttcgtttttcttccag
   | ||||||||||||||||| || |||||||| ||||| || || ||||| ||||| || |||||||| || || || || ||||||||||||||||||||       | || || |     ||||   |  | | || ||||  ||| |  ||| ||| |                                
GCGTCTGGAACTACGTCGTCACTGCGCACAAGCCGACCAATGTGACGCACTCGTGCGTTGGAAATTTCACGAGCCCCCACGAGCTCAATCTCATCATCGCgta-------agtccctgtttagctcctcttgcgcttctcctctcactcaat--catttcctccag-----------------------------

upper sequence: GLYMA08G13680.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ23079 (Selaginella moellendorffii), 5'ss of exon 1
CTATATGGAACTACGTCGTCACGGCTCACAAGCCCACCAACGTCACCCACTCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGCgtatctactcattctctttccttttcctagggttcctttcttctctttcattttcatctccacttatttaccctttcacttcgtttttcttccag
   | ||||| ||||||||||| || |||||||| ||||| || || ||||| ||||| || |||||||| || || || || ||||||||||||||||||||       | || || |     ||||   |  | | || ||||  ||| |  ||| ||| |                                
GCGTCTGGAATTACGTCGTCACTGCGCACAAGCCAACCAATGTGACGCACTCGTGCGTTGGAAATTTCACGAGCCCCCACGAGCTCAATCTCATCATCGCgta-------agtccctgtttagctcctcttgcgcttctcctctcactcaat--catttcctccag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209714348|gb|BW665598.1|BW665598
EST:     TCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGC                         GAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG
genomic: TCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGCgtatctactc ... tttcttccagGAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG
EST: gi|213615293|gb|DB963487.1|DB963487
EST:     TCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGC                         GAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG
genomic: TCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGCgtatctactc ... tttcttccagGAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG
EST: gi|213589389|gb|DB961722.1|DB961722
EST:     TCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGC                         GAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG
genomic: TCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGCgtatctactc ... tttcttccagGAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG
EST: gi|213590572|gb|DB968122.1|DB968122
EST:     TCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGC                         GAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG
genomic: TCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGCgtatctactc ... tttcttccagGAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG
EST: gi|209717579|gb|BW679686.1|BW679686
EST:     TCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGC                         GAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG
genomic: TCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGCgtatctactc ... tttcttccagGAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG
EST: gi|209723170|gb|BW675116.1|BW675116
EST:     TCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGC                         GAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG
genomic: TCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGCgtatctactc ... tttcttccagGAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG