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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTCCCCCAACATTGAGTCCCTTGAGGTACAAGGCTGTAGCTGGATTAGGGTCCCTGAAACCAAGCATTTGAGGAAACTTTCCATATCCAACAGTGCAGgtagttaactctacttaagtttttgggattctttgttcatgacatggtatgagagcctttgggattaagtgcgtgtttggtttggtgccactaaaaaatg...

Basic information

species Glycine max
transcript GLYMA08G13480.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13480.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G10780.1 (Arabidopsis thaliana), 5'ss of exon 2
ACTTCCCCCAACATTGAGTCCCTTGAGGTACAAGGCTGTAGCTGGATTAGGGTCCCTGAAACCAAGCATTTGAGGAAACTTTCCATATCCAACAGTGCAGgtagttaactcta--cttaagtttttgggattctttgttcatgacatggtatgagagcctttgggattaagtgcgtgtttggtttggtgccactaaaaaatg
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ACGAGTCAGAGATTAGTGTCCCTTGATGTTCAAGGTTGTAGCTGGATTCGTGTCCCTGAAACCAAATTCTTAAAGAACCTATCCATCTCCAGTGTTACTGgtaatgagtcttgagttttaacttgtttcgttcttccattaccatctg----cagatctcatttgtcttactttgtctctgattggttaacag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6454351|gb|AW185034.1|AW185034
EST:     GGTCCCTGAAACCAAGCATTTGAGGAAACTTTCCATATCCAACAGTGCAG                         GGAGAGTGTATATGGGTGATTTTGGAAAAACTTTCAGCTCTGGAGTATCTG
genomic: GGTCCCTGAAACCAAGCATTTGAGGAAACTTTCCATATCCAACAGTGCAGgtagttaact ... ttgctttcagGGAGAGTGTATATGGTTGATTTTGGAAAA-CTTTCAGCTCTGGAGTATCTG