1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGATCGATCGAACATGGATGAGGAGTACGATGTGATCGTGTTGGGCACGGGTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAGgtacgtactcatcactttcctatttctttcattttcttttctatagatccaattctctcatgctaattcctatttcttgttcgattcag
species | Glycine max |
transcript | GLYMA08G13300.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAG GTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTCEST: gi|7590904|gb|AW706647.1|AW706647
genomic: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAGgtacgtactc ... ttcgattcagGTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTC
EST: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAG GTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTCEST: gi|18848745|gb|BM567857.1|BM567857
genomic: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAGgtacgtactc ... ttcgattcagGTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTC
EST: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAG GTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTCEST: gi|209700942|gb|BW683135.1|BW683135
genomic: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAGgtacgtactc ... ttcgattcagGTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTC
EST: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAG GTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTCEST: gi|213598655|gb|DB958183.1|DB958183
genomic: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAGgtacgtactc ... ttcgattcagGTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTC
EST: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAG GTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTCEST: gi|163927330|gb|EH040145.1|EH040145
genomic: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAGgtacgtactc ... ttcgattcagGTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTC
EST: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAG GTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTCEST: gi|151394091|gb|EV263962.1|EV263962
genomic: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAGgtacgtactc ... ttcgattcagGTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTC
EST: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAG GTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTCEST: gi|192328654|gb|FK023154.1|FK023154
genomic: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAGgtacgtactc ... ttcgattcagGTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTC
EST: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAG GTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTCEST: gi|193706374|gb|FK648868.1|FK648868
genomic: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAGgtacgtactc ... ttcgattcagGTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTC
EST: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAG GTTCTGCACATGGACAGGAATGACTATTACEST: gi|10842948|gb|BF066306.1|BF066306
genomic: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAGgtacgtactc ... ttcgattcagGTTCTGCACATGGACAGGAATGACTATTAC
EST: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAG GTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTCEST: gi|151407978|gb|EV277793.1|EV277793
genomic: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAGgtacgtactc ... ttcgattcagGTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTC
EST: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAG GTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTCEST: gi|151411945|gb|EV281756.1|EV281756
genomic: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAGgtacgtactc ... ttcgattcagGTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTC
EST: GTCTCGAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAG GTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTCEST: gi|6667361|gb|AW278812.1|AW278812
genomic: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAGgtacgtactc ... ttcgattcagGTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTC
EST: GTCTCAAGGAGTGCATCCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAG GTTCTGCACATGGACAGGAATGACEST: gi|192327650|gb|FK020669.1|FK020669
genomic: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAGgtacgtactc ... ttcgattcagGTTCTGCACATGGACAGGAATGAC
EST: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAG GTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTCEST: gi|17021888|gb|BM092922.1|BM092922
genomic: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAGgtacgtactc ... ttcgattcagGTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTC
EST: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAG GTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTCEST: gi|120532856|gb|EH260989.1|EH260989
genomic: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAGgtacgtactc ... ttcgattcagGTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTC
EST: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAG GTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTCEST: gi|213589680|gb|DB965840.1|DB965840
genomic: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAGgtacgtactc ... ttcgattcagGTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTC
EST: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAG GTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTC
genomic: GTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAGgtacgtactc ... ttcgattcagGTTCTGCACATGGACAGGAATGACTATTACGGAGGAGAATCCACTTCGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATCGATCGAACATGGATGAGGAGTACGATGTGATCGTGTTGGGCACGGGTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCCGTCGATGGCCTCAAGgtacgtactcatcactttcctatttctttcattttcttttctatagatccaattctctcatgctaattcctatttcttgttcgattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG