1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TATTCTGAGAATTGAGAATAGAGAGCACAAAGAAACTGCCATGGACGCTCTGAGGAAACAAGCCAGCAAGCTCAGAGAGCAAGTTGCCAAACAGCAACAGgtttgctctcacttcccttcaagtttgtctttttctgcgttctcacttcaagttccgtcattctcttcccaaatttgcatcttggtaccccaaattccca...
species | Glycine max |
transcript | GLYMA08G12810.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGAGGAAACAAGCCAGCAAGCTCAGAGAGCAAGTTGCCAAACAGCAACAG GCTGTAATAAAGCAGTTCAGTAGTAGTGGTTATGAGAGTTCAGATGTTGTGEST: gi|193307742|gb|FK271932.1|FK271932
genomic: TGAGGAAACAAGCCAGCAAGCTCAGAGAGCAAGTTGCCAAACAGCAACAGgtttgctctc ... ttttattcagGCTGTAATAAAGCAGTTCAGTAGTAGTGGTTATGAGAGTTCAGATGTTGTG
EST: TGAGGAAACAAGCCAGCAAGCTCAGAGAGCAAGTTGCCAAACAGCAACAG GCTGTAATAAAGCAGTTCAGTAGTAGTGGTTATGAGAGTTCAGATGTTGTG
genomic: TGAGGAAACAAGCCAGCAAGCTCAGAGAGCAAGTTGCCAAACAGCAACAGgtttgctctc ... ttttattcagGCTGTAATAAAGCAGTTCAGTAGTAGTGGTTATGAGAGTTCAGATGTTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTCTGAGAATTGAGAATAGAGAGCACAAAGAAACTGCCATGGACGCTCTGAGGAAACAAGCCAGCAAGCTCAGAGAGCAAGTTGCCAAACAGCAACAGgtttgctctcacttcccttcaagtttgtctttttctgcgttctcacttcaagttccgtcattctcttcccaaatttgcatcttggtaccccaaattccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttcc