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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGCCGACGCAGAGAATCGATGATTCGCCGCGGGAAGATCACGGCGACGGCTTTCGTTCCGCGCACGATGTGTCTCGCCAGGCGCAATTGCTGGCCGAGgttacttccttatgccttcgcttgcttttgtaaaacgacattgaaagtttagttgattagtgcgtttagtaagagtgttgattttgtgatggttttttggtttggttcag

Basic information

species Glycine max
transcript GLYMA08G11760.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254324135|gb|GR836260.1|GR836260
EST:     GCTTTCGTTCCGCGCACGATGTGTCTCGCCAGGCGCAATTGCTGGCCGAG                         TTGTCGAAGAAGGTGGTGGATATGAGCGAGTTGCGGAGCCTCGCGTGTCAA
genomic: GCTTTCGTTCCGCGCACGATGTGTCTCGCCAGGCGCAATTGCTGGCCGAGgttacttcct ... tttggttcagTTGTCGAAGAAGGTGGTGGATATGAGCGAGTTGCGGAGCCTCGCGTGTCAA
EST: gi|37997369|gb|CF808958.1|CF808958
EST:     GCTTTCGTTCCGCGCACGATGTGTCTCGCCAGGCGCAATTGCTGGCCGAG                         TTGTCGAAGAAGGTGGTGGATATGAGCGAGTTGCGGAGCCTCGCGTGTCAA
genomic: GCTTTCGTTCCGCGCACGATGTGTCTCGCCAGGCGCAATTGCTGGCCGAGgttacttcct ... tttggttcagTTGTCGAAGAAGGTGGTGGATATGAGCGAGTTGCGGAGCCTCGCGTGTCAA
EST: gi|22540576|gb|BU090419.1|BU090419
EST:     GCTTTCGTTCCGCGCACGATGTGTCTCGCCAGGCGCAATTGCTGGCCGAG                         TTGTCGAAGAAGGTGGTGGATATGAGCGAGTTGCGGAGCCATCGCGTG-CA
genomic: GCTTTCGTTCCGCGCACGATGTGTCTCGCCAGGCGCAATTGCTGGCCGAGgttacttcct ... tttggttcagTTGTCGAAGAAGGTGGTGGATATGAGCGAGTTGCGGAGCC-TCGCGTGTCA