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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTCTCTTACACTCTACGACTACTCTTCCATTCTATCGTCACTCATTCCCAAACGAAACGAAACGCAGCGTTTCTTCAGATTCAGACCCAAACTCATGgtacgctacgctcttatcaatcccctcaatcatcgtatcttctttacactaaactctgtttgtacaattatataaacacaccgtttttgcgtttcag

Basic information

species Glycine max
transcript GLYMA08G11740.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298170368|gb|HO018992.1|HO018992
EST:     CCAAACGAAACGAAACGCAGCGTTTCTTCAGATTCAGACCCAAACTCATG                         GCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCC
genomic: CCAAACGAAACGAAACGCAGCGTTTCTTCAGATTCAGACCCAAACTCATGgtacgctacg ... tgcgtttcagGCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCC
EST: gi|192307232|gb|FK001232.1|FK001232
EST:     CCAAACGAAACGAAACGCAGCGTTTCTTCAGATTCAGACCCAAACTCATG                         GCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCC
genomic: CCAAACGAAACGAAACGCAGCGTTTCTTCAGATTCAGACCCAAACTCATGgtacgctacg ... tgcgtttcagGCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCC
EST: gi|192325005|gb|FK016146.1|FK016146
EST:     CCAAACGAAACGAAACGCAGCGTTTCTTCAGATTCAGACCCAAACTCATG                         GCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCC
genomic: CCAAACGAAACGAAACGCAGCGTTTCTTCAGATTCAGACCCAAACTCATGgtacgctacg ... tgcgtttcagGCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCC
EST: gi|298187154|gb|HO034303.1|HO034303
EST:     CCAAACGAAACGAAACGCAGCGTTTCTTCAGATTCAGACCCAAACTCATG                         GCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCC
genomic: CCAAACGAAACGAAACGCAGCGTTTCTTCAGATTCAGACCCAAACTCATGgtacgctacg ... tgcgtttcagGCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCC
EST: gi|15287594|gb|BI471485.1|BI471485
EST:     CCAAACGAAACGAAACGCAGCGTTTCTTCAGATTCAGACCCAAACTCATG                         GCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCC
genomic: CCAAACGAAACGAAACGCAGCGTTTCTTCAGATTCAGACCCAAACTCATGgtacgctacg ... tgcgtttcagGCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCC
EST: gi|298177566|gb|HO027233.1|HO027233
EST:     CCAAACGAAACGAAACGCAGCGTTTCTTCAGATTCAGACCCAAACTCATG                         GCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGATGCC
genomic: CCAAACGAAACGAAACGCAGCGTTTCTTCAGATTCAGACCCAAACTCATGgtacgctacg ... tgcgtttcagGCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCC