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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCGAAATGCCAAATGGTGGTACTCTGCCTTCCACAACATCACTGCCATGGTTGGTGCTGGTGTCCTCACCCTTCCTTATGCCATGTCTATGATGGGCTGgtacctacatcctcttaaactttaaactatgattgtaacttgtacctagtcacactttgaaaaattgatgctttatatatgatatcaaattagcaacaattgtgatgcattaacag

Basic information

species Glycine max
transcript GLYMA08G10740.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G10740.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os12g14100.1 (Oryza sativa), 5'ss of exon 1
CCCGAAATGCCAAATGGTGGTACTCTGCCTTCCACAACATCACTGCCATGGTTGGTGCTGGTGTCCTCACCCTTCCTTATGCCATGTCTATGATGGGCTGgtacctacatcctcttaaactttaaactatgattgtaacttgtacctagtcacactttgaaaaattgatgctttatatatgatatcaaattagcaacaattgtgatgcattaacag
|||| || ||||| ||||||||||| || ||||||||| |||| |||||||| || || || ||||||| ||| || |  ||||||||   | | ||||||||| || || |  | |     | |  | |  || |   ||  |  |  ||   | | ||  | |    | ||| | | |  | |   |                           
CCCGCAACGCCAAGTGGTGGTACTCCGCTTTCCACAACGTCACCGCCATGGTCGGCGCCGGCGTCCTCAGCCTCCCCTTCGCCATGTCCGAGCTCGGCTGgtacata-attcattca-----tcatttctccttctccatttcatttcatcgtccatggatgagtgttcgattt-tgtttttttttgtag--------------------------

upper sequence: GLYMA08G10740.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G175321_T01 (Zea mays), 5'ss of exon 1
CCCGAAATGCCAAATGGTGGTACTCTGCCTTCCACAACATCACTGCCATGGTTGGTGCTGGTGTCCTCACCCTTCCTTATGCCATGTCTATGATGGGCTGgtaccta-catcctcttaaactttaaactatgattgtaacttgtacctagtcacactttgaaaaattgatgctt---tatatatgatatcaaattagcaacaattg--tgatgcattaacag---------------------------------------------
|| | || ||||||||||||||||| |||||||||||| |||| |||||||| || || || ||||||| ||| || || || |||||   | | ||||||||| |  |||||   | | ||        | |||||        ||| |   |    || || ||||   |||   |  || ||   ||    | |   || ||   ||||  ||  | |                                              
CCAGGAACGCCAAATGGTGGTACTCCGCCTTCCACAACGTCACGGCCATGGTCGGCGCCGGCGTCCTCAGCCTGCCCTACGCAATGTCCGAGCTCGGCTGgtacgtggcatccatctgatct---ggtcttaattgttgtcctcgcctcgat-cggcatgcaatattgtgccttgcatgcatctgtcgtcgcgatcgatccatttaactgatcgatggatatatggatctgcatgcgtgaacgaactaacacaccgcatgcgtgcag

upper sequence: GLYMA08G10740.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G24400.1 (Arabidopsis thaliana), 5'ss of exon 1
CCCGAAATGCCAAATGGTGGTACTCTGCCTTCCACAACATCACTGCCATGGTTGGTGCTGGTGTCCTCACCCTTCCTTATGCCATGTCTATGATGGGCTGgtacctacatcctcttaaactttaaactatgattgtaacttgtacctagtcacactttgaaaaattgatgctttatatatgatatcaaattagcaacaattgtgatgcattaacag
|| |||| || || |||||||||||||| || |||||  |||| |||||||||||||||||||| || | | | || || || ||||| |   | || |||||     |   | || ||  | | | | | | | |   || |   |     ||   |   |  |   |  || || ||| | |                                
CCAGAAACGCTAAGTGGTGGTACTCTGCTTTTCACAATGTCACCGCCATGGTTGGTGCTGGTGTTCTTAGCTTGCCCTACGCTATGTCCAATCTCGGATGgtatac-taatttgttgaatctgataatcttaatctcctttatgttttaatccatgatctgatctgagtttttgatgtattacag-------------------------------

upper sequence: GLYMA08G10740.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G67640.1 (Arabidopsis thaliana), 5'ss of exon 1
CCCGAAATGCCAAATGGTGGTACTCTGCCTTCCACAACATCACTGCCATGGTTGGTGCTGGTGTCCTCACCCTTCCTTATGCCATGTCTATGATGGGCTGgtacctacatcctcttaaactttaaactatgattgtaacttgtacctagtcacactttgaaaaattgatgctttatatatgatatcaaattagcaacaattgtgatgcattaacag
|  |||||||||| |||||||||||||| || |||||  |||| |||||||| || |||||||| |||| | | ||||| ||||||||||   | || |||||  || ||||  |  | ||  | | ||| |   || ||  |   |||  |  || |   | ||  | | |  |||| | |||| | | |     ||||| |||||      |||
CTAGAAATGCCAAGTGGTGGTACTCTGCGTTTCACAATGTCACCGCCATGGTCGGGGCTGGTGTACTCAGCTTACCTTACGCCATGTCTAATCTTGGATGgta--tatatccaatctagctacata-tataa--atatctcat---tagaaaatctct---atatacacgttcaatat-taatattacact-----caattttgatg-----gcag

upper sequence: GLYMA08G10740.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S5_176V6.1 (Physcomitrella patens), 5'ss of exon 2
CCCGAAATGCCAAATGGTGGTACTCTGCCTTCCACAACATCACTGCCATGGTTGGTGCTGGTGTCCTCACCCTTCCTTATGCCATGTCTATGATGGGCTGgtacctacatcctcttaaactttaaactatgattgtaacttgtacct-agtcacactttgaaaaattgatgctttatatatgatatcaaattagcaacaattgtgatgcattaacag
  || || ||||||||||||||||| |||||||||||  | || || ||||| || || || || ||     | ||  | ||||||       |    ||||    |   |  || |   |||          | |||   ||  |  ||||||||  |   |  |||  | ||     |        || || |   ||| |  || ||    |||
ATCGCAAAGCCAAATGGTGGTACTCCGCCTTCCACAATGTTACCGCAATGGTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtg---agggctcctcacgttttg---------tctaatccgtctcagagtcacacagtttcatgttgcagtttgcggcagtgggcacaagtaacgg-aatggctattcacatgcag

upper sequence: GLYMA08G10740.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ10950 (Selaginella moellendorffii), 5'ss of exon 2
CCCGAAATGCCAAATGGTGGTACTCTGCCTTCCACAACATCACTGCCATGGTTGGTGCTGGTGTCCTCACCCTTCCTTATGCCATG-TCTATGATGGGCTGgtacctacatc------ctcttaaactttaaactatgattgtaacttgtacctagtcacactttgaaaaattgatgctttatatatgatatcaaattagcaacaattgtgatgcattaacag
|| | || ||||| ||||||||||| |||||||| ||  |||| ||||||||||| ||||| || || | ||| || |  || ||| |||||  ||| ||||||  | | ||      ||  |    || || |  |   |  || ||   | ||||  |  |     |||||  || |   |   || | ||  ||| |                       
CCAGGAACGCCAAGTGGTGGTACTCGGCCTTCCATAATGTCACCGCCATGGTTGGAGCTGGAGTTCTTAGCCTCCCCTCGGCGATGGTCTATCTTGG-CTGgtaagttcttcgcagctcttcttcgtttcaatcgctagcttcaaatt-cgcttagtttcgatcc---aaattcttggtcagtcagtgttttctcattcgtgctc------------------