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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAATGGCGACCCTTTTCCAGGGATTGGGAGTTGTGAACCCATCATTGGCTTCTTCAAACTCCAACAAGTTCCATCTTCCTTCTCGTACATCCCTCTCAGgttcgcttcttaaatttctttccttttctttcttcaaaattttcaaactgcttcttattgagatttttgttattgacttttaaatgttgtttcttttcattctgtgtgcaataattgattggttcag

Basic information

species Glycine max
transcript GLYMA08G10200.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21255776|gb|BQ452664.1|BQ452664
EST:     TTCTTCAAACTCCAACAAGTTCCATCTTCCTTCTCGTACATCCCTCTCAG                         AGAGGAAAGATGGCATTTTTGTGGTCAGATCTGATGCAACAAGGGTAAGCA
genomic: TTCTTCAAACTCCAACAAGTTCCATCTTCCTTCTCGTACATCCCTCTCAGgttcgcttct ... attggttcagAGAGGAAAGATGGCATTTTTGTGGTCAGATCTGATGCAACAAGGGTAAGCA
EST: gi|16348357|gb|BI973952.1|BI973952
EST:     TTCTTCAAACTCCAACAAGTTCCATCTTCCTTCTCGTACATCCCTCTCAG                         AGAGGAAAGATGGCATTTTTGTGGTCAGATCTGATGCAACAAGGGTAAGCA
genomic: TTCTTCAAACTCCAACAAGTTCCATCTTCCTTCTCGTACATCCCTCTCAGgttcgcttct ... attggttcagAGAGGAAAGATGGCATTTTTGTGGTCAGATCTGATGCAACAAGGGTAAGCA
EST: gi|20075922|gb|BQ094705.1|BQ094705
EST:     TTCTTCAAACTCCAACAAGTTCCATCTTCCTTCTCGTACATCCCTCTCAG                         AGAGGAAAGATGGCATTTTTGTGGTCAGATCTGATGCAACAAGGGTAAGCA
genomic: TTCTTCAAACTCCAACAAGTTCCATCTTCCTTCTCGTACATCCCTCTCAGgttcgcttct ... attggttcagAGAGGAAAGATGGCATTTTTGTGGTCAGATCTGATGCAACAAGGGTAAGCA
EST: gi|207827812|gb|GD797507.1|GD797507
EST:     CCAACAAGTTCCATCTTCCTTCTCGTACATCCCTCTCAG                         AGAGGAAAGATGGCATTTTTGTGGTCAGATCTGATGCAACAAGGGTAAGCA
genomic: CCAACAAGTTCCATCTTCCTTCTCGTACATCCCTCTCAGgttcgcttct ... attggttcagAGAGGAAAGATGGCATTTTTGTGGTCAGATCTGATGCAACAAGGGTAAGCA
EST: gi|22523607|gb|BU082418.1|BU082418
EST:     TTCTTCAAACTCCAACAAGTTCCATCTTCCTTCTCGTACATCCCTCTCAG                         AGAGGAAAGATGGCATTTTTGTGGTCAGATCTGATGCAACAAGGGTAAGCA
genomic: TTCTTCAAACTCCAACAAGTTCCATCTTCCTTCTCGTACATCCCTCTCAGgttcgcttct ... attggttcagAGAGGAAAGATGGCATTTTTGTGGTCAGATCTGATGCAACAAGGGTAAGCA
EST: gi|21677852|gb|BQ630203.1|BQ630203
EST:     TTCTTCAAACTCCAACAAGTTCCATCTTCCTTCTCGTACATCCCTCTCAG                         AGAGGAAAGATGGCATTTTTGTGGTCAGATCTGATGCAACAAGGGTAAGCA
genomic: TTCTTCAAACTCCAACAAGTTCCATCTTCCTTCTCGTACATCCCTCTCAGgttcgcttct ... attggttcagAGAGGAAAGATGGCATTTTTGTGGTCAGATCTGATGCAACAAGGGTAAGCA
EST: gi|20448253|gb|BQ252377.1|BQ252377
EST:     TTCTTCAAACTCCAACAAGTTCCATCTTCCTTCTCGTACATCCCTCTCAG                         AGAGGAAAGATGGCATTTTTGTGGTCAGATCTGATGCAACAAGGGTAAGCA
genomic: TTCTTCAAACTCCAACAAGTTCCATCTTCCTTCTCGTACATCCCTCTCAGgttcgcttct ... attggttcagAGAGGAAAGATGGCATTTTTGTGGTCAGATCTGATGCAACAAGGGTAAGCA