Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCATCACCTTCCTATGCACCACCAATAAGCTCCATACCTTCTAATTCTCTACTCTCTCTCACTTCTCTCTATCACATTTTTCTTACAAGgtatgtatgtgcctttttctttgcttttttttttttgcatttttttcatgtttttaatgttatgtcaattgcctttaattttctcaattcctcgattacc...

Basic information

species Glycine max
transcript GLYMA08G09160.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120494029|gb|EH222196.1|EH222196
EST:     ATCACATTTTTCTTACAAG                         ATGGCAGCATCATCAGCATGCCTTGTAGGGAATGGTTTATCTACACGGGGT
genomic: ATCACATTTTTCTTACAAGgtatgtatgt ... ttggatgcagATGGCAGCATCATCAGCATGCCTTGTAGGGAATGGTTTATCTACACGGGGT
EST: gi|209721517|gb|BW672254.1|BW672254
EST:     ATCACATTTTTCTTACAAG                         ATGGCAGCATCATCAGCATGCCTTGTAGGGAATGGTTTATCTACACGGGGT
genomic: ATCACATTTTTCTTACAAGgtatgtatgt ... ttggatgcagATGGCAGCATCATCAGCATGCCTTGTAGGGAATGGTTTATCTACACGGGGT
EST: gi|209717777|gb|BW666050.1|BW666050
EST:     ATCACATTTTTCTTACAAG                         ATGGCAGCATCATCAGCATGCCTTGTAGGGAATGGTTTATCTACACGGGGT
genomic: ATCACATTTTTCTTACAAGgtatgtatgt ... ttggatgcagATGGCAGCATCATCAGCATGCCTTGTAGGGAATGGTTTATCTACACGGGGT
EST: gi|209713712|gb|BW679402.1|BW679402
EST:     ATCACATTTTTCTTACAAG                         ATGGCAGCATCATCAGCATGCCTTGTAGGGAATGGTTTATCTACACGGGGT
genomic: ATCACATTTTTCTTACAAGgtatgtatgt ... ttggatgcagATGGCAGCATCATCAGCATGCCTTGTAGGGAATGGTTTATCTACACGGGGT