1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCCGAAGCTGAAAGAGGTTTCTCAGCTCTTCGATCGCTTCAAGGCTTCGTTTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttcccaccccacctaaccctagtttacttatttcactaatttccaaaattcgcccaccattttctctgtttctgctatttgaagatcgattctgtt...
species | Glycine max |
transcript | GLYMA08G08690.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCTEST: gi|8284019|gb|BE021578.1|BE021578
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: CCAATCTCCTTTCTCAGCTAAAG GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCTEST: gi|213615022|gb|DB957060.1|DB957060
genomic: CCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCTEST: gi|298194068|gb|HO040716.1|HO040716
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCTEST: gi|12689998|gb|BG156334.1|BG156334
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCTEST: gi|38193646|gb|CF922852.1|CF922852
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCTEST: gi|298170815|gb|HO015791.1|HO015791
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCTTTTCTCAGCTAAAG GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCGGATACACCTEST: gi|15663156|gb|BI700527.1|BI700527
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCTEST: gi|192303507|gb|FG998601.1|FG998601
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCTEST: gi|192326943|gb|FK019220.1|FK019220
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCTEST: gi|7692387|gb|AW760495.1|AW760495
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCTEST: gi|15814178|gb|BI786453.1|BI786453
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCTEST: gi|213601171|gb|DB964664.1|DB964664
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCTEST: gi|192299340|gb|FG988711.1|FG988711
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCTEST: gi|192317899|gb|FK009435.1|FK009435
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCTEST: gi|213601151|gb|DB964658.1|DB964658
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCTEST: gi|298180573|gb|HO025660.1|HO025660
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCTEST: gi|13125434|gb|BG316004.1|BG316004
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: TTCTCCGGAACGACTTC-ATAACTGTTCCAATCTCCTTTCTCAGCTAAAG GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCTEST: gi|17401304|gb|BM178086.1|BM178086
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCTEST: gi|208177644|gb|GD977345.1|GD977345
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCTEST: gi|192326357|gb|FK015889.1|FK015889
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACTTEST: gi|7588314|gb|AW704112.1|AW704112
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCTEST: gi|24205598|gb|BU964851.1|BU964851
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCTEST: gi|6566729|gb|AW234361.1|AW234361
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCTEST: gi|192294009|gb|FG987178.1|FG987178
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
EST: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAG GTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
genomic: TTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttccca ... ttacttgcagGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCGAAGCTGAAAGAGGTTTCTCAGCTCTTCGATCGCTTCAAGGCTTCGTTTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGgtatttcccaccccacctaaccctagtttacttatttcactaatttccaaaattcgcccaccattttctctgtttctgctatttgaagatcgattctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcccac