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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCTGGAACGCCAAATAAGTTGTTGCCTGTGCTTGATGCTGTGCATGAGGTTGCAATTTACATTCATAGGTTCCATAATCTTGACCTTTTTGAACAAGGgtatgctccactttttgatgttcttttgtttacttttcagttttcttttttaattctggtcttttattcttattgctgttatgcag

Basic information

species Glycine max
transcript GLYMA08G08190.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G08190.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv12s0055g00430.t01 (Vitis vinifera), 5'ss of exon 1
GCCCTGGAACGCCAAATAAGTTGTTGCCTGTGCTTGATGCTGTGCATGAGGTTGCAATTTACATTCATAGGTTCCATAATCTTGACCTTTTTGAACAAGGgtatgctccactttttgatgtt-cttttgtttacttttcagttttcttttttaattctggtcttttattcttattgctgttatgcag--------------
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CCAATGCGAAGCCCAAGCCGCCTCCTGCTATGTTGGAGACTGTACAAGAGATTGCAATCTACATTCATAGGTTCCACAACCTCGACCTTTTTCAGCAAGGgtaaaacatcttcattgcttttgcttttgttctaaaacggctccttttcttttagtgtttttatttattttt-taaatgagataggatttcaggtgatttc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209722154|gb|BW651221.1|BW651221
EST:     GTTGCAATTTACATTCATAGGTTCCATAATCTTGACCTTTTTGAACAAGG                         ATGGTACAAAATCAAGGTTACCATGAGATGGGAGGATGGTGAAGGCTCCTA
genomic: GTTGCAATTTACATTCATAGGTTCCATAATCTTGACCTTTTTGAACAAGGgtatgctcca ... tgttatgcagATGGTACAAAATCAAGGTTACCATGAGATGGGAGGATGGTGAAGGCTCCTA
EST: gi|193604836|gb|FK559524.1|FK559524
EST:     GTTGCAATTTACATTCATAGGTTCCATAATCTTGACCTTTTTGAACAAGG                         ATGGTACAAAATCAAGGTTACCATGAGATGGGAGGATGGTGAAGGCTCCTA
genomic: GTTGCAATTTACATTCATAGGTTCCATAATCTTGACCTTTTTGAACAAGGgtatgctcca ... tgttatgcagATGGTACAAAATCAAGGTTACCATGAGATGGGAGGATGGTGAAGGCTCCTA