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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACGGTGCCTCCGTCTCTCTTCCCGATTTTAGCGGCTATTACGCTCTTCAGTGGGCCTCGCTCAACAACTTTCACGACATTGCGCACTATCTCATTCAGgtaatttgcattttttttggggtgttcgtgtaagtgctttagctcagaattgatgatagcgaaattgtgcgtttcatttttacttttttaaatttaagtt...

Basic information

species Glycine max
transcript GLYMA08G06860.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213613523|gb|DB963253.1|DB963253
EST:     AGTGGGCCTCGCTCAACAACTTTCACGACATTGCGCACTATCTCATTCAG                         CATGGGGCGGATGTCAATGCTAAAGACAACATGCAACAAACGGCATTGCAC
genomic: AGTGGGCCTCGCTCAACAACTTTCACGACATTGCGCACTATCTCATTCAGgtaatttgca ... tgttatgaagCATGGGGCGGATGTCAATGCTAAAGACAACATGCAACAAACGGCATTGCAC
EST: gi|11688756|gb|BF596432.1|BF596432
EST:     AGTGGGCCTCGCTCAACACCTTTCACGACATTGCGCACTATCTCATTCAG                         CATGGGGCGGATGTCAATGCTAAAGACAACATGCAACA
genomic: AGTGGGCCTCGCTCAACAACTTTCACGACATTGCGCACTATCTCATTCAGgtaatttgca ... tgttatgaagCATGGGGCGGATGTCAATGCTAAAGACAACATGCAACA
EST: gi|9259490|gb|BE347645.1|BE347645
EST:     AGTGGGCCTCGCTCAACAACTTTCACGACATTGCGCACTATCTCATTCAG                         CATGAGGCGGATGTCAATGCTAAAGACAACATGCAACAAACGGCATTGCAC
genomic: AGTGGGCCTCGCTCAACAACTTTCACGACATTGCGCACTATCTCATTCAGgtaatttgca ... tgttatgaagCATGGGGCGGATGTCAATGCTAAAGACAACATGCAACAAACGGCATTGCAC
EST: gi|213606776|gb|DB961015.1|DB961015
EST:     AGTGGGCCTCGCTCAACAACTTTCACGACATTGCGCACTATCTCATTCAG                         CATGGGGCGGATGTCAATGCTAAAGACAACATGCAACAAACGGCATTGCAC
genomic: AGTGGGCCTCGCTCAACAACTTTCACGACATTGCGCACTATCTCATTCAGgtaatttgca ... tgttatgaagCATGGGGCGGATGTCAATGCTAAAGACAACATGCAACAAACGGCATTGCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGACGGTGCCTCCGTCTCTCTTCCCGATTTTAGCGGCTATTACGCTCTTCAGTGGGCCTCGCTCAACAACTTTCACGACATTGCGCACTATCTCATTCAGgtaatttgcattttttttggggtgttcgtgtaagtgctttagctcagaattgatgatagcgaaattgtgcgtttcatttttacttttttaaatttaagtt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggtgt