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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAATTGAGAGAGCTGAAGCAATTCATAGAGATATGCAAGTCCAATCCCTCACTTCTCCACAATCCATCTCTTTCATTCTTCAAGACTTATCTTCTCAGgtttcgttttcttctcattttttcatttctttctcctaattctcactcactcactcactcactcactcatacactgtctctgctgctgtag

Basic information

species Glycine max
transcript GLYMA08G06010.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21888905|gb|BQ742118.1|BQ742118
EST:     TCACTTCTCCACAATCCATCTCTTTCATTCTTCAAGACTTATCTTCTCAG                         CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG
genomic: TCACTTCTCCACAATCCATCTCTTTCATTCTTCAAGACTTATCTTCTCAGgtttcgtttt ... gctgctgtagCCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG
EST: gi|308222667|gb|HO760642.1|HO760642
EST:     TCACTTCTCCACAATCCATCTCTTTCATTCTTCAAGACTTATCTTCTCAG                         CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG
genomic: TCACTTCTCCACAATCCATCTCTTTCATTCTTCAAGACTTATCTTCTCAGgtttcgtttt ... gctgctgtagCCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG
EST: gi|12773394|gb|BG238321.1|BG238321
EST:     TCACTTCTCCACAATCCATCTCTTTCATTCTTCAAGACTTATCTTCTCAG                         CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG
genomic: TCACTTCTCCACAATCCATCTCTTTCATTCTTCAAGACTTATCTTCTCAGgtttcgtttt ... gctgctgtagCCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG
EST: gi|254343946|gb|GR857702.1|GR857702
EST:     TCACTTCTCCACAATCCATCTCTTTCATTCTTCAAGACTTATCTTCTCAG                         CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG
genomic: TCACTTCTCCACAATCCATCTCTTTCATTCTTCAAGACTTATCTTCTCAGgtttcgtttt ... gctgctgtagCCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG
EST: gi|192299227|gb|FG990710.1|FG990710
EST:     TCACTTCTCCACAATCCATCTCTTTCATTCTTCAAGACTTATCTTCTCAG                         CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG
genomic: TCACTTCTCCACAATCCATCTCTTTCATTCTTCAAGACTTATCTTCTCAGgtttcgtttt ... gctgctgtagCCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG
EST: gi|254315121|gb|GR830114.1|GR830114
EST:     TCACTTCTCCACAATCCATCTCTTTCATTCTTCAAGACTTATCTTCTCAG                         CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG
genomic: TCACTTCTCCACAATCCATCTCTTTCATTCTTCAAGACTTATCTTCTCAGgtttcgtttt ... gctgctgtagCCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG
EST: gi|254324847|gb|GR834272.1|GR834272
EST:     TCACTTCTCCACAATCCATCTCTTTCATTCTTCAAGACTTATCTTCTCAG                         CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG
genomic: TCACTTCTCCACAATCCATCTCTTTCATTCTTCAAGACTTATCTTCTCAGgtttcgtttt ... gctgctgtagCCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG
EST: gi|298196303|gb|HO044694.1|HO044694
EST:     TCACTTCTCCACAATCCATCTCTTTCATTCTTCAAGACTTATCTTCTCAG                         CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG
genomic: TCACTTCTCCACAATCCATCTCTTTCATTCTTCAAGACTTATCTTCTCAGgtttcgtttt ... gctgctgtagCCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG
EST: gi|18730076|gb|BM525667.1|BM525667
EST:     TCACTTCTCCACAATCCATCTCTTTCATTCTTCAAGACTTATCTTCTCAG                         CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG
genomic: TCACTTCTCCACAATCCATCTCTTTCATTCTTCAAGACTTATCTTCTCAGgtttcgtttt ... gctgctgtagCCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG