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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGTCATCTCCGACATCACTCAATTCTCCGTCACGCTCCTTCCCACCTATTTCAAACACAACAATTTCTCCAGTTTCATCAGACAACTCAATATCTATgtccgtctctctcttttcttcaattcatttcgattctgtttctttgcctttgtaactttatatcttcatctgcaaattattatatgattattgctatcat...

Basic information

species Glycine max
transcript GLYMA08G05220.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G05220.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv01s0011g05970.t01 (Vitis vinifera), 5'ss of exon 1
CTTTGTCATCTCCGACATCACTCAATTCTCCGTCACGCTCCTTCCCACCTATTTCAAACACAACAATTTCTCCAGTTTCATCAGACAACTCAATATCTATgtccgtctct-ctcttttcttcaattcatttcgattctgtttctttgcctttgtaactttatatcttcatctgcaaattattatatgattattgctatcat
||| || ||    ||||  ||  | |||     |    | || || |  |||||||| ||||| |||||||| || |||||  | |||||||||||||||||  |  ||| ||| |||    |  | | ||  ||| |     | ||  |   |        | |  |||    |||   |  | |   | | |   ||  
CTTCGTGATACGGGACACGACCGAGTTCAGTCACCAATTGCTCCCTAAGTATTTCAAGCACAATAATTTCTCAAGCTTCATGCGTCAACTCAATATCTATgtgagcttcttctcctttgcatacatgaattgaattttaaaattgtgtttgcctggaaaagga-cgccatggaaaaacggtagtttaggtttcgagttcta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213606436|gb|DB963001.1|DB963001
EST:     ATTTCAAACACAACAATTTCTCCAGTTTCATCAGACAACTCAATATCTAT                         GGTTTCAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAGAACTTT
genomic: ATTTCAAACACAACAATTTCTCCAGTTTCATCAGACAACTCAATATCTATgtccgtctct ... aatctaacagGGTTTCAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAGAACTTT
EST: gi|213593151|gb|DB969893.1|DB969893
EST:     ATTTCAAACACAACAATTTCTCCAGTTTCATCAGACAACTCAATATCTAT                         GGTTTCAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAGAACTTT
genomic: ATTTCAAACACAACAATTTCTCCAGTTTCATCAGACAACTCAATATCTATgtccgtctct ... aatctaacagGGTTTCAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAGAACTTT
EST: gi|209712081|gb|BW676697.1|BW676697
EST:     ATTTCAAACACAACAATTTCTCCAGTTTCATCAGACAACTCAATATCTAT                         GGTTTCAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAGAACTTT
genomic: ATTTCAAACACAACAATTTCTCCAGTTTCATCAGACAACTCAATATCTATgtccgtctct ... aatctaacagGGTTTCAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAGAACTTT
EST: gi|19348840|gb|BM893372.1|BM893372
EST:     ATTTCAAACACAACAATTTCTCCAGTTTCATCAGACAACTCAATATCTAT                         GGTTTCAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAGAACTTT
genomic: ATTTCAAACACAACAATTTCTCCAGTTTCATCAGACAACTCAATATCTATgtccgtctct ... aatctaacagGGTTTCAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAGAACTTT
EST: gi|209712405|gb|BW671257.1|BW671257
EST:     ATTTCAAACACAACAATTTCTCCAGTTTCATCAGACAACTCAATATCTAT                         GGTTTCAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAGAACTTT
genomic: ATTTCAAACACAACAATTTCTCCAGTTTCATCAGACAACTCAATATCTATgtccgtctct ... aatctaacagGGTTTCAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAGAACTTT
EST: gi|192299005|gb|FG990361.1|FG990361
EST:     ATTTCAAACACAACAATTTCTCCAGTTTCATCAGACAACTCAATATCTAT                         GGTTTGAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAGAACTTT
genomic: ATTTCAAACACAACAATTTCTCCAGTTTCATCAGACAACTCAATATCTATgtccgtctct ... aatctaacagGGTTTCAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAGAACTTT
EST: gi|254317228|gb|GR826173.1|GR826173
EST:     CAGTTTCATCAGACAACTCAATATCTAT                         GGTTTCAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAGAACTTT
genomic: CAGTTTCATCAGACAACTCAATATCTATgtccgtctct ... aatctaacagGGTTTCAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAGAACTTT