1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCGATGAGGCCGAGCCTCGACGCGGACGAGTTCATGAACCTGTTGCACGGTTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAGgtgcgaaaatgagactcgatctggcgagttcttaacctgattttgctgcttcgtgttgttcactaatcactgtgttgcgtgtttgtag
species | Glycine max |
transcript | GLYMA08G05100.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAG ATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAAGCCTTGAGGCEST: gi|193306658|gb|FK272864.1|FK272864
genomic: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAGgtgcgaaaat ... gtgtttgtagATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAAGCCTTGAGGC
EST: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAG ATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATEST: gi|193480200|gb|FK444618.1|FK444618
genomic: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAGgtgcgaaaat ... gtgtttgtagATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGAT
EST: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAG ATAAGGACAGAGEST: gi|208053704|gb|GD850593.1|GD850593
genomic: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAGgtgcgaaaat ... gtgtttgtagATAAGGACAGAG
EST: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAG ATAAGGACAGAGAATTATEST: gi|207809745|gb|GD782379.1|GD782379
genomic: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAGgtgcgaaaat ... gtgtttgtagATAAGGACAGAGAATTAT
EST: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAG ATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAAGEST: gi|193687812|gb|FK631739.1|FK631739
genomic: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAGgtgcgaaaat ... gtgtttgtagATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAAG
EST: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAG ATAAGGACAGAGAATTAEST: gi|207775503|gb|GD746878.1|GD746878
genomic: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAGgtgcgaaaat ... gtgtttgtagATAAGGACAGAGAATTA
EST: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAG ATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAAEST: gi|208087557|gb|GD887647.1|GD887647
genomic: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAGgtgcgaaaat ... gtgtttgtagATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAA
EST: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAG ATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAAGEST: gi|193555690|gb|FK513237.1|FK513237
genomic: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAGgtgcgaaaat ... gtgtttgtagATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAAG
EST: TTCGGATCCGGCGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAG ATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAAGCCTTGAGGCEST: gi|193686676|gb|FK626083.1|FK626083
genomic: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAGgtgcgaaaat ... gtgtttgtagATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAAGCCTTGAGGC
EST: CAATCGGTTGGAGAGTGAAGTGAGAG ATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAAGCCTTGAGGCEST: gi|193696714|gb|FK637940.1|FK637940
genomic: CAATCGGTTGGAGAATGAAGTGAGAGgtgcgaaaat ... gtgtttgtagATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAAGCCTTGAGGC
EST: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAG ATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAAGEST: gi|193663904|gb|FK611244.1|FK611244
genomic: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAGgtgcgaaaat ... gtgtttgtagATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAAG
EST: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAG ATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAAEST: gi|207778597|gb|GD749384.1|GD749384
genomic: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAGgtgcgaaaat ... gtgtttgtagATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAA
EST: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAG ATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAAGEST: gi|208337330|gb|GE133410.1|GE133410
genomic: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAGgtgcgaaaat ... gtgtttgtagATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAAG
EST: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAG ATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGAEST: gi|193360405|gb|FK328059.1|FK328059
genomic: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAGgtgcgaaaat ... gtgtttgtagATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGA
EST: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAG ATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAAGEST: gi|193527711|gb|FK485901.1|FK485901
genomic: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAGgtgcgaaaat ... gtgtttgtagATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAAG
EST: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAG ATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAAGEST: gi|193365836|gb|FK328969.1|FK328969
genomic: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAGgtgcgaaaat ... gtgtttgtagATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAAG
EST: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAG ATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAAGEST: gi|193366606|gb|FK332384.1|FK332384
genomic: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAGgtgcgaaaat ... gtgtttgtagATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAAG
EST: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAG ATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATEST: gi|207737366|gb|GD716950.1|GD716950
genomic: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAGgtgcgaaaat ... gtgtttgtagATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGAT
EST: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAG ATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAAGCCTTGAGGCEST: gi|193349241|gb|FK314033.1|FK314033
genomic: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAGgtgcgaaaat ... gtgtttgtagATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAAGCCTTGAGGC
EST: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAG ATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGAEST: gi|193442862|gb|FK404240.1|FK404240
genomic: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAGgtgcgaaaat ... gtgtttgtagATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGA
EST: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAG ATAAGGACAGAGAATTATCAGAAGCGCAGGCG-AGATCAAAG
genomic: TTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAGgtgcgaaaat ... gtgtttgtagATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGATGAGGCCGAGCCTCGACGCGGACGAGTTCATGAACCTGTTGCACGGTTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAGgtgcgaaaatgagactcgatctggcgagttcttaacctgattttgctgcttcgtgttgttcactaatcactgtgttgcgtgtttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA