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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTATTAGGGTTCCAAAGAAGGTCTTGCAGTTCGCTGGAATCGATGGTGTCTTCACTTCCTCAAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttcaattctttttttcttctcataatgtctatttttctttaattgattatcagatattgctttattaacttgatttatggtaaggttttaaatctcggt...

Basic information

species Glycine max
transcript GLYMA08G05090.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G05090.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0007g08370.t01 (Vitis vinifera), 5'ss of exon 1
TGCTATTAGGGTTCCAAAGAAGGTCTTGCAGTTCGCTGGAATCGATGGTGTCTTCACTTCCTCAAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttcaattctttttttcttctcataatgtctatttttctttaatt----gattatcagatattgctttattaacttgatttatggtaaggttttaaatctcggt
 ||   |||||||||||||||||| |||||||| ||||||||||| |  || |||||||| || |||||||| ||||||||||||||||||||||||||||||  ||   ||| ||  |||  |  |||  ||||   ||| |||     ||  |   |  ||  | |    | || | ||    | ||    | ||||||   
GGCCGCTAGGGTTCCAAAGAAGGTTTTGCAGTTTGCTGGAATCGAGGACGTGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatctatttctttgtctgctt-tgttgatttggatttgattcgaaaatgtttctacgtttatcttcagatttaagtttatttgagtgaattaatctc---

upper sequence: GLYMA08G05090.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S411_32V6.1 (Physcomitrella patens), 5'ss of exon 1
TGCTATTAGGGTTCCAAAGAAGGTCTTGCAGTTCGCTGGAATCGATGGTGTCTTCACTTCCTCAAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttcaattctttttttcttctcataatgtc-tatttttctttaattgattat----cagatatt---gctttattaacttgatttatggtaaggttttaaatctcggt
 ||     | || || ||||||||| | |||||||| || || || | ||| |||||||| ||| | || ||||||||||| || ||||||||||| |||||      || | | ||| ||  ||  ||| ||    |  ||||||     |    || || |    | |||||  ||  |  |||||| |  || ||||        
AGCCGCCCGAGTGCCCAAGAAGGTCCTCCAGTTCGCCGGTATTGAAGATGTATTCACTTCATCACGCGGCTCCACCAAAACTCTTGGAAATTTCGTTAAGgtgtgtacctctgtctctccttttagagtcgtaaaggtgattaattcgcgctagtccaaatttctagggtttatcgacgggtcttatgggattgtattaa--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8283588|gb|BE021147.1|BE021147
EST:     TCTTCACTTCCTCAAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACTTTTGACTGTTTGCT
genomic: TCTTCACTTCCTCAAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttcaattct ... gtttttacagGCTACTTTTGACTGTTTGCT
EST: gi|151410861|gb|EV280676.1|EV280676
EST:     TCTTCACTTCCTCAAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACTTTTGACTGTTTGCTGAAAAGCTACGGTTTTCTAACACTGGAGTTC
genomic: TCTTCACTTCCTCAAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttcaattct ... gtttttacagGCTACTTTTGACTGTTTGCTGAAAAGCTACGGTTTTCTAACACTGGAGTTC
EST: gi|19269471|gb|BM885727.1|BM885727
EST:     TCTTCACTTCCTCAAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACTTTTGACTGTTTGCTGAAAAGCTACGGTTTTCTAACACTGGAGTTC
genomic: TCTTCACTTCCTCAAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttcaattct ... gtttttacagGCTACTTTTGACTGTTTGCTGAAAAGCTACGGTTTTCTAACACTGGAGTTC