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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTTGTGTATTCCATTCCACCACCTGCTACCTACTGCACCAGTTCCTAGCTCGCTTCTTCTCTGTTCTCTCTCATCTCCTCAGATCGATCAAGCATCAGgttttcctcttcgcttttcttttctttttcgaagctcctaaactatcatctttcaactatcgatcctaccaatcgttcttttgcttcaagatttacttgt...

Basic information

species Glycine max
transcript GLYMA08G05030.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13312371|gb|BG406022.1|BG406022
EST:     CGCTTCTTCTCTGTTCTCTCTCATCTCCTCAGATCGATCAAGCATCAG                         GGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
genomic: CGCTTCTTCTCTGTTCTCTCTCATCTCCTCAGATCGATCAAGCATCAGgttttcctct ... actcttacagGGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
EST: gi|192296041|gb|FG993404.1|FG993404
EST:     CTCGCTTCTTCTCTGTTCTCTCTCATCTCCTCAGATCGATCAAGCATCAG                         GGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
genomic: CTCGCTTCTTCTCTGTTCTCTCTCATCTCCTCAGATCGATCAAGCATCAGgttttcctct ... actcttacagGGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
EST: gi|192325065|gb|FK016176.1|FK016176
EST:     CTCGCTTCTTCTCTGTTCTCTCTCATCTCCTCAGATCGATCAAGCATCAG                         GGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
genomic: CTCGCTTCTTCTCTGTTCTCTCTCATCTCCTCAGATCGATCAAGCATCAGgttttcctct ... actcttacagGGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
EST: gi|15816027|gb|BI788302.1|BI788302
EST:     GATCGATCAAGCATCAG                         GGAGCTTTGAGGGTTGATTCTCTGGTGTAGTAGCAATCAGCACAATAGAAA
genomic: GATCGATCAAGCATCAGgttttcctct ... actcttacagGGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
EST: gi|254326846|gb|GR836455.1|GR836455
EST:     CTCGCTTCTTCTCTGTTCTCTCTCATCTCCTCAGATCGATCAAGCATCAG                         GGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
genomic: CTCGCTTCTTCTCTGTTCTCTCTCATCTCCTCAGATCGATCAAGCATCAGgttttcctct ... actcttacagGGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
EST: gi|209716428|gb|BW653869.1|BW653869
EST:     CTCGCTTCTTCTCTGTTCTCTCTCATCTCCTCAGATCGATCAAGCATCAG                         GGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
genomic: CTCGCTTCTTCTCTGTTCTCTCTCATCTCCTCAGATCGATCAAGCATCAGgttttcctct ... actcttacagGGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
EST: gi|209712046|gb|BW674191.1|BW674191
EST:     CTCGCTTCTTCTCTGTTCTCTCTCATCTCCTCAGATCGATCAAGCATCAG                         GGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
genomic: CTCGCTTCTTCTCTGTTCTCTCTCATCTCCTCAGATCGATCAAGCATCAGgttttcctct ... actcttacagGGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
EST: gi|14125023|gb|BG789461.1|BG789461
EST:     CTCGCTTCTTCTCTGTTCTCTCTCATCTCCTCAGATCGATCAAGCATCAG                         GGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
genomic: CTCGCTTCTTCTCTGTTCTCTCTCATCTCCTCAGATCGATCAAGCATCAGgttttcctct ... actcttacagGGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
EST: gi|192309316|gb|FK000524.1|FK000524
EST:     TCTCTGTTCTCTCTCATCTCATCGGATCGATCAAGCATCAG                         GGAGCTTTGAGGGTTGATTCTCTGGTGTAGTAGCAATCAGCACAATAGAAA
genomic: TCTCTGTTCTCTCTCATCTCCTCAGATCGATCAAGCATCAGgttttcctct ... actcttacagGGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
EST: gi|254313714|gb|GR831343.1|GR831343
EST:     CTCGCTTCTTCTCTGTTCTCTCTCATCTCCTCAGATCGATCAAGCATCAG                         GGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
genomic: CTCGCTTCTTCTCTGTTCTCTCTCATCTCCTCAGATCGATCAAGCATCAGgttttcctct ... actcttacagGGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
EST: gi|298172847|gb|HO019831.1|HO019831
EST:     CTCGCTTCTTCTCTGTTCTCTCTCATCTCCTCAGATCGATCAAGCATCAG                         GGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
genomic: CTCGCTTCTTCTCTGTTCTCTCTCATCTCCTCAGATCGATCAAGCATCAGgttttcctct ... actcttacagGGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
EST: gi|17153552|gb|BM143485.1|BM143485
EST:     GATCGATCAAGCATCAG                         GGAGCTTTGAGGGTTGATTCTCTGGTGTAGTAGCAATCAGCACAATAGAAA
genomic: GATCGATCAAGCATCAGgttttcctct ... actcttacagGGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
EST: gi|213604953|gb|DB956328.1|DB956328
EST:     CTCGCTTCTTCTCTGTTCTCTCTCATCTCCTCAGATCGATCAAGCATCAG                         GGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
genomic: CTCGCTTCTTCTCTGTTCTCTCTCATCTCCTCAGATCGATCAAGCATCAGgttttcctct ... actcttacagGGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
EST: gi|192330755|gb|FK022018.1|FK022018
EST:     CTCGCTTCTTCTCTGTTCTCTCTCATCTCCTCAGATCGATCAAGCATCAG                         GGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
genomic: CTCGCTTCTTCTCTGTTCTCTCTCATCTCCTCAGATCGATCAAGCATCAGgttttcctct ... actcttacagGGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
EST: gi|24205916|gb|BU965169.1|BU965169
EST:     TCTCATCTCATCGGATCGATCAAGCATCAG                         GGAGCTTTGAGGGTTGATTCTCTGGTGTAGTAGCAATCAGCACAATAGAAA
genomic: TCTCATCTCCTCAGATCGATCAAGCATCAGgttttcctct ... actcttacagGGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
EST: gi|213599556|gb|DB968353.1|DB968353
EST:     GATCAAGCATCAG                         GGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
genomic: GATCAAGCATCAGgttttcctct ... actcttacagGGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA
EST: gi|23727320|gb|BU761687.1|BU761687
EST:     GATCGATCAAGCATCAG                         GGAGCTTTGAGGGTTGATTCTCTGGTGTAGTAGCAATCAGCACAATAGAAA
genomic: GATCGATCAAGCATCAGgttttcctct ... actcttacagGGGGCTTTGAGGGTTGATTCTCTGGTGTGGTAGCAATCAGCACAATAGAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCTTGTGTATTCCATTCCACCACCTGCTACCTACTGCACCAGTTCCTAGCTCGCTTCTTCTCTGTTCTCTCTCATCTCCTCAGATCGATCAAGCATCAGgttttcctcttcgcttttcttttctttttcgaagctcctaaactatcatctttcaactatcgatcctaccaatcgttcttttgcttcaagatttacttgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcttc