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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCGGCGAAACGATTTTTTGATGATTCTGATCAAGACAACAATAATAAGCCACCAGGCGATAAACGGATGAGAACTACACCAAGACCTTCTTTTGCTTCgtatgttctgtttaaccatttcactcaattgctagcttcatcaattaagttatatattttcatttcatcgtatcctgttataaattaattaaaccaatgtttcaatcttcttgacacag

Basic information

species Glycine max
transcript GLYMA08G04920.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120533738|gb|EH261871.1|EH261871
EST:     CCACCAGGCGATAAACGGATGAGAACTACACCAAGACCTTCTTTTGCTTC                         GGTAATAGGAGAAGTGGTGATGGTGAAAAACTTGCAGAACCTTTTCTCAGG
genomic: CCACCAGGCGATAAACGGATGAGAACTACACCAAGACCTTCTTTTGCTTCgtatgttctg ... cttgacacagGGTAATAGGAGAAGTGGTGATGGTGAAAAACTTGCAGAACCTTTTCTCAGG
EST: gi|120533732|gb|EH261865.1|EH261865
EST:     CCACCAGGCGATAAACGGATGAGAACTACACCAAGACCTTCTTTTGCTTC                         GGTAATAGGAGAAGTGGTGATGGTGAAAAACTTGCAGAACCTTTTCTCAGG
genomic: CCACCAGGCGATAAACGGATGAGAACTACACCAAGACCTTCTTTTGCTTCgtatgttctg ... cttgacacagGGTAATAGGAGAAGTGGTGATGGTGAAAAACTTGCAGAACCTTTTCTCAGG
EST: gi|120532881|gb|EH261014.1|EH261014
EST:     CCACCAGGCGATAAACGGATGAGAACTACACCAAGACCTTCTTTTGCTTC                         GGTAATAGGAGAAGTGGTGATGGTGAAAAACTTGCAGAACCTTTTCTCAGG
genomic: CCACCAGGCGATAAACGGATGAGAACTACACCAAGACCTTCTTTTGCTTCgtatgttctg ... cttgacacagGGTAATAGGAGAAGTGGTGATGGTGAAAAACTTGCAGAACCTTTTCTCAGG
EST: gi|120532111|gb|EH260244.1|EH260244
EST:     CCACCAGGCGATAAACGGATGAGAACTACACCAAGACCTTCTTTTGCTTC                         GGTAATAGGAGAAGTGGTGATGGTGAAAAACTTGCAGAACCTTTTCTCAGG
genomic: CCACCAGGCGATAAACGGATGAGAACTACACCAAGACCTTCTTTTGCTTCgtatgttctg ... cttgacacagGGTAATAGGAGAAGTGGTGATGGTGAAAAACTTGCAGAACCTTTTCTCAGG
EST: gi|120530479|gb|EH258612.1|EH258612
EST:     CCACCAGGCGATAAACGGATGAGAACTACACCAAGACCTTCTTTTGCTTC                         GGTAATAGGAGAAGTGGTGATGGTGAAAAACTTGCAGAACCTTTTCTCAGG
genomic: CCACCAGGCGATAAACGGATGAGAACTACACCAAGACCTTCTTTTGCTTCgtatgttctg ... cttgacacagGGTAATAGGAGAAGTGGTGATGGTGAAAAACTTGCAGAACCTTTTCTCAGG