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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTCTCTTCTTCGAAGGCCAGCGCTCCGGCAAACTCCCCGCCGACCAGCGCCTCCGCTGGCGCCACGACTCTGCATTGCACGACGGCGCCACCGCCGGAgtaagtttcttgttctgttatgaaaatgtagattgatagagaatatgatgatgattaatgaggtaggcacattgtgttgtttactcag

Basic information

species Glycine max
transcript GLYMA08G04840.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G04840.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g14540.1 (Oryza sativa), 5'ss of exon 1
CATTCTCTTCTTCGAAGGCCAGCGCTCCGGCAAACTCCCCGCCGACCAGCGCCTCCGCTGGCGCCACGACTCTGCATTGCACGACGGCGCCACCGCCGGAgtaag----------------tttcttgttctgttatga---aaatgtagattgatagagaata-tgatgatgat--taatgaggtaggcacattgtgttgtttactcag-------------
||| || |||||||| |||||||||||||||   || ||  ||||||||||||||||||||||||  ||||| ||  |  ||||||||||||||||||| ||| |                | |||   |||||| |      ||||  | |||  |   | || | |||||||   |   |  |  ||    |||   || |  |   |             
CATCCTGTTCTTCGAGGGCCAGCGCTCCGGCCGCCTGCCACCCGACCAGCGCCTCCGCTGGCGCCGTGACTCCGCCCTCAACGACGGCGCCACCGCCGGCgtacggaccaccaccgctctctctctctctctgttctagcattaatgcggtttgcaatgtagtagtaatgatgacgatgtcgctgacggtttcttggaatggtggcgtggcgtggcgtggcag

upper sequence: GLYMA08G04840.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os02g50040.1 (Oryza sativa), 5'ss of exon 1
CATTCTCTTCTTCGAAGGCCAGCGCTCCGGCAAACTCCCCGCCGACCAGCGCCTCCGCTGGCGCCACGACTCTGCATTGCACGACGGCGCCACCGCCGGAgtaagt-ttcttgttctgttatgaaaatgtagattgatagagaatatgatgatgattaatgaggtaggcacattgtgttgtttactcag----
||| || ||||| || || |||||||||||||  || ||  |||||||||| ||||||||||||| |||||| |   | |||||||||||| ||||| | ||| || |||| || || | |        ||      ||       ||| |  |  |  |||  |  |   |   || |||   | |      
CATACTGTTCTTTGAGGGACAGCGCTCCGGCAGGCTTCCTCCCGACCAGCGTCTCCGCTGGCGCCGCGACTCCGGCCTCCACGACGGCGCCGCCGCCAGCgtacgtattctcgtcctataacttggcgttaagaatgtactactggtgaagcagcattgtgatttgtgagtaacctgctgtggccgcgtgtag

upper sequence: GLYMA08G04840.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G076049_T01 (Zea mays), 5'ss of exon 1
CATTCTCTTCTTCGAAGGCCAGCGCTCCGGCAAACTCCCCGCCGACCAGCGCCTCCGCTGGCGCCACGACTCTGCATTGCACGACGGCGCCACCGCCGGAgtaagtttcttgttctgttatga-----aaatgtagattgataga-------gaatatgatgatgattaatgaggtaggcacat-tgtgttgtttactcag----------------------
||| ||||||||||| || |||||||| || |  |||||  | |||||||||||||||||||||| |||||| |   | |||||||||||| | ||||| ||| ||     |  |   |  ||     ||||     |  ||||             |   ||  |    ||| | | | |||| ||||    ||||   |                      
CATCCTCTTCTTCGAGGGGCAGCGCTCGGGGAGGCTCCCGCCGGACCAGCGCCTCCGCTGGCGCCGCGACTCCGGCCTCCACGACGGCGCCGCGGCCGGGgtacgtgcaccgacccagtccgactaataaatcactctctatagttgccttttggcctatagagtaccgttgaagcaag-acatgtgtgagcattaccgcgccatttggtcgtcgcgtaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18041520|gb|BM309814.1|BM309814
EST:     GCCTCCGCTGGCGCCACGACTCTGCATTGCACGACGGCGCCACCGCCGGA                         GTGGACTTGAGTGGAGGGTACTACGACGCCGGGGATAACATAAAGTTCGGG
genomic: GCCTCCGCTGGCGCCACGACTCTGCATTGCACGACGGCGCCACCGCCGGAgtaagtttct ... gtttactcagGTGGACTTGAGTGGAGGGTACTACGACGCCGGGGATAACATAAAGTTCGGG