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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGCTATGGCCGAAGAATTTGTGAAGGGCTCTGTTCATCAAAACGGCGTCGCTGTCATAACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAGgttttccatattcttcttcgtttccgtaattatgtatgctattaagttgagaattgtcttcggagatttgcttttggaatctggactgttttgttgaact...

Basic information

species Glycine max
transcript GLYMA08G04460.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G04460.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g39344.3 (Oryza sativa), 5'ss of exon 1
TCCGCTATGGCCGAAGAATTTGTGAAGGGCTCTGTTCATCAAAACGGCGTCGCTGTCATAACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAGgt----tttccatattcttcttcgtttccgtaattatgtatgctattaagttgagaattgtcttcggagatttgcttttggaatctggactgttttgttgaact
 ||||    || || || || |||||||||   ||    |  ||||||||||| ||||| |||||||| |||||||| || ||||||||||||||||| |||     |  |   |   |||   | ||  |   | | | |     |   |      |  || ||  |  |  | |  ||| |   || |      |  |    
GCCGCCGCCGCGGAGGAGTTCGTGAAGGGCCGCGTCACCCCCAACGGCGTCGCCGTCATCACCCTCGACCGCCCCAAGGCCCTCAACGCCATGAACCTCGgtgagggtcgctcctctctctctctctctctctctctctctctctctctctctctcttcctcctcctatttgggttactgggagtagggcgaccgggccg----

upper sequence: GLYMA08G04460.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G047564_T01 (Zea mays), 5'ss of exon 1
TCCGCTATGGCCGAAGAATTTGTGAAGGGCTCTGTTCATCAAAACGGCGTCGCTGTCATAACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAGgt---------tttccatattcttcttcgtttccgtaattatgtatgcta-----ttaagttgagaattgtcttcggagatttgcttttggaatctggactgttttgttgaact
 || |    || || || || |||||||||   ||    |  ||||||||||| ||||| || ||||| || ||||| || ||||||||||||||||| |||           ||||  |  |  ||    ||||           || |      | | |  | ||   |  ||||  | ||  ||  | |||||  ||              
GCCACCGCCGCAGACGAGTTCGTGAAGGGCCGCGTCTTCCCCAACGGCGTCGCCGTCATCACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCGgtgaggatggacctccagctcttatttgacctccgaggaccctctggccagggatctcaataaataaacttagtcgggtacttttttccgcaatctatac--------------

upper sequence: GLYMA08G04460.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv11s0016g04290.t01 (Vitis vinifera), 5'ss of exon 1
TCCGCTATGGCCGAAGAATTTGTGAAGGGCTCTGTTCATCAAAACGGCGTCGCTGTCATAACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAGgttt------tccatattcttcttcgtttccgtaattatgtatgctattaagttgagaattgtcttcggagatttgcttttggaatctggactgttttgttgaact
 | |||   || || |||||||| |||||   |||||||| ||| ||||| ||||| ||||| || ||||||||||| |||||||| || ||||||||||||||        ||| || | |||  |     |  | | | |    |||   | |    |||  || |||   |||| ||||  |||  |  |   ||| ||||  
GCTGCTGCTGCTGAGGAATTTGTCAAGGGAAATGTTCATCCAAATGGCGTTGCTGTGATAACTCTTGATCGCCCCAAGGCTCTCAATGCTATGAACCTAGgtttggttttctcatgttttccttgttccatctcttaaagcacatcatttgttcgtt--ttggattaggatgattgcatttg--atcgagtgttcgttgctgaa--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207802272|gb|GD773054.1|GD773054
EST:     CGCTGTCATAACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAG                         ATATGGATGTAAAGTATAAAAGTTATCTTGATGAATGGGAATCTGACCCAA
genomic: CGCTGTCATAACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAGgttttccata ... tgtgatgcagATATGGATGTAAAGTATAAAAGTTATCTTGATGAATGGGAATCTGACCCAA
EST: gi|7924914|gb|AW830940.1|AW830940
EST:     CGCTGTCATCACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAG                         ATATGGATGTAAAGTATAAAAGTTATCTTGATGAATGGGAATCTGATCCAA
genomic: CGCTGTCATAACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAGgttttccata ... tgtgatgcagATATGGATGTAAAGTATAAAAGTTATCTTGATGAATGGGAATCTGACCCAA
EST: gi|13562624|gb|BG550844.1|BG550844
EST:     CGCTGTCATAACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAG                         ATATGGATGTAAAGTATAAAAGTTATCTTGATGAATGGGAATCTGACCCAA
genomic: CGCTGTCATAACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAGgttttccata ... tgtgatgcagATATGGATGTAAAGTATAAAAGTTATCTTGATGAATGGGAATCTGACCCAA
EST: gi|209704856|gb|BW673467.1|BW673467
EST:     CGCTGTCATCACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAG                         ATATGGATGTAAAGTATAAAAGTTATCTTGATGAATGGGAATCTGATCCAA
genomic: CGCTGTCATAACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAGgttttccata ... tgtgatgcagATATGGATGTAAAGTATAAAAGTTATCTTGATGAATGGGAATCTGACCCAA
EST: gi|298170101|gb|HO018725.1|HO018725
EST:     CGCTGTCATAACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAG                         ATATGGATGTAAAGTATAAAAGTTATCTTGATGAATGGGAATCTGACCCAA
genomic: CGCTGTCATAACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAGgttttccata ... tgtgatgcagATATGGATGTAAAGTATAAAAGTTATCTTGATGAATGGGAATCTGACCCAA
EST: gi|209726516|gb|BW658083.1|BW658083
EST:     CGCTGTCATAACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAG                         ATATGGATGTAAAGTATAAAAGTTATCTTGATGAATGGGAATCTGACCCAA
genomic: CGCTGTCATAACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAGgttttccata ... tgtgatgcagATATGGATGTAAAGTATAAAAGTTATCTTGATGAATGGGAATCTGACCCAA