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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATTCTGAATTCTTAACTGGAATCAGGGTTTTGGTTTTTTTTCATTATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGAgtaattctcttgatccttcatttttctttttatcattgtccaaataaatataatgttgatgaatctctttaattataattaatttgacctatcgaacttt...

Basic information

species Glycine max
transcript GLYMA08G03630.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192308725|gb|FG999764.1|FG999764
EST:     CATTATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGA                         GTTTTATCACTCTCTTCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT
genomic: CATTATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGAgtaattctct ... atgctttcagGTTTTATCACTCTCTTCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT
EST: gi|213599245|gb|DB960013.1|DB960013
EST:     CATTATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGA                         GTTTTATCACTCTCTTCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT
genomic: CATTATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGAgtaattctct ... atgctttcagGTTTTATCACTCTCTTCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT
EST: gi|151406483|gb|EV276298.1|EV276298
EST:     CATTATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGA                         GTTTTATCACTCTCTTCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT
genomic: CATTATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGAgtaattctct ... atgctttcagGTTTTATCACTCTCTTCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT
EST: gi|8827592|gb|BE211322.1|BE211322
EST:     CATTATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGA                         GTTTTATCACTCTCTTCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT
genomic: CATTATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGAgtaattctct ... atgctttcagGTTTTATCACTCTCTTCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT
EST: gi|19452471|gb|BM953881.1|BM953881
EST:     CATTATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGA                         GTTTTATCACTCTCTTCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT
genomic: CATTATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGAgtaattctct ... atgctttcagGTTTTATCACTCTCTTCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT
EST: gi|298172446|gb|HO019486.1|HO019486
EST:     CATTATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGA                         GTTTTATCACTCTCTTCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT
genomic: CATTATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGAgtaattctct ... atgctttcagGTTTTATCACTCTCTTCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT
EST: gi|298183475|gb|HO028688.1|HO028688
EST:     TATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGA                         GTTTTATCACTCTCTTCCGCCAACAACGAAGGCATATGGCACCGTTTGCCT
genomic: TATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGAgtaattctct ... atgctttcagGTTTTATCACTCTCTTCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT
EST: gi|22524785|gb|BU083596.1|BU083596
EST:     CATTATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGA                         GTTTTATCACTCTCTTCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT
genomic: CATTATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGAgtaattctct ... atgctttcagGTTTTATCACTCTCTTCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT
EST: gi|298169339|gb|HO020699.1|HO020699
EST:     CATTATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGA                         GTTTTATCACTCTCTTCCGCCAATAACGAAGGCACATGGCACCGTTTGCCT
genomic: CATTATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGAgtaattctct ... atgctttcagGTTTTATCACTCTCTTCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT
EST: gi|21887095|gb|BQ740308.1|BQ740308
EST:     ATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGA                         GTTTTATCACTCTCTTCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT
genomic: ATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGAgtaattctct ... atgctttcagGTTTTATCACTCTCTTCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT
EST: gi|208167960|gb|GD966046.1|GD966046
EST:     CATTATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGA                         GTTTTATCACTCTCTTCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT
genomic: CATTATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGAgtaattctct ... atgctttcagGTTTTATCACTCTCTTCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT
EST: gi|192332519|gb|FK025624.1|FK025624
EST:     CATTATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGA                         GTTTTATCACTCTCTTCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT
genomic: CATTATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGAgtaattctct ... atgctttcagGTTTTATCACTCTCTTCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT
EST: gi|298171588|gb|HO021180.1|HO021180
EST:     CATTATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGA                         GTTTTATCACTCTCTCCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT
genomic: CATTATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGAgtaattctct ... atgctttcagGTTTTATCACTCTCTTCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT
EST: gi|192308360|gb|FK001346.1|FK001346
EST:     CATTATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGA                         GTTTTATCACTCTCTTCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT
genomic: CATTATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGAgtaattctct ... atgctttcagGTTTTATCACTCTCTTCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT
EST: gi|22522837|gb|BU081648.1|BU081648
EST:     GTAAGCAATGTCTTCTCCCGCGGA                         GTTTTATCACTCTCTTCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT
genomic: GTAAGCAATGTCTTCTCCCGCGGAgtaattctct ... atgctttcagGTTTTATCACTCTCTTCCGCCAATAACGAAGGCATATGGCACCGTTTGCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAATTCTGAATTCTTAACTGGAATCAGGGTTTTGGTTTTTTTTCATTATCTTCCTCAGTAAGCAATGTCTTCTCCCGCGGAgtaattctcttgatccttcatttttctttttatcattgtccaaataaatataatgttgatgaatctctttaattataattaatttgacctatcgaacttt

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