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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGAAGAAGAGACCAAGTGTGTCTGTGTGTGTGAGAGAGAGAGCAATGGCTGGCTCGTGGGCACGCCGTTCTCTGATTGTTCTAGCCATCATTTCCTTCGgtaatttcacctcctaatagatctgttcatgcttttcttttagcttttgcttaaatgcgcaagtggaaaaatgtaaccagatctcgctttgtttgaacct...

Basic information

species Glycine max
transcript GLYMA08G02940.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254343099|gb|GR859261.1|GR859261
EST:     TGGCTCGTGGGCACGCCGTTCTCTGATTGTTCTAGCCATCATTTCCTTCG                         GATGTCTATTTGCGATTTCCATTGCTAAGGAGGAAGCCACCAAGTTAGGGA
genomic: TGGCTCGTGGGCACGCCGTTCTCTGATTGTTCTAGCCATCATTTCCTTCGgtaatttcac ... ttctccatagGATGTCTATTTGCGATTTCCATTGCTAAGGAGGAAGCCACCAAGTTAGGGA
EST: gi|254341733|gb|GR852870.1|GR852870
EST:     TGGCTCGTGGGCACGCCGTTCTCTGATTGTTCTAGCCATCATTTCCTTCG                         GATGTCTATTTGCGATTTCCATTGCTAAGGAGGAAGCCACCAAGTTAGGGA
genomic: TGGCTCGTGGGCACGCCGTTCTCTGATTGTTCTAGCCATCATTTCCTTCGgtaatttcac ... ttctccatagGATGTCTATTTGCGATTTCCATTGCTAAGGAGGAAGCCACCAAGTTAGGGA
EST: gi|193691995|gb|FK631034.1|FK631034
EST:     TTGTTCTAGCCATCATTTCCTTCG                         GATGTCTATTTGCGATTTCCATTGCTAAGGAGGAAGCCACCAAGTTAGGGA
genomic: TTGTTCTAGCCATCATTTCCTTCGgtaatttcac ... ttctccatagGATGTCTATTTGCGATTTCCATTGCTAAGGAGGAAGCCACCAAGTTAGGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAGAAGAAGAGACCAAGTGTGTCTGTGTGTGTGAGAGAGAGAGCAATGGCTGGCTCGTGGGCACGCCGTTCTCTGATTGTTCTAGCCATCATTTCCTTCGgtaatttcacctcctaatagatctgttcatgcttttcttttagcttttgcttaaatgcgcaagtggaaaaatgtaaccagatctcgctttgtttgaacct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaaat