1 5' 3' | 2 5' 3' | 3 5' 3' |
CCCCCAGCAGAGTCTCTTCCTAGGAATGAAACCATTGGAGGCTACATCTTTGTTTGCAACAATGATACCATGGCTGAGAATCTCAAGAGACAACTCTTTGgtatgttccttaatttcctagttgagactcaattatgcaattgttatattcttattattatcatctaagatactatagacttcaggttttttaattgctg...
species | Glycine max |
transcript | GLYMA08G02840.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGTTTGCAACAATGATACCATGGCTGAGAATCTCAAGAGACAACTCTTTG GTCTGCCTCCACGATACAGAGATTCTGTTCGGGCCATTACTCCGEST: gi|254342775|gb|GR858937.1|GR858937
genomic: TGTTTGCAACAATGATACCATGGCTGAGAATCTCAAGAGACAACTCTTTGgtatgttcct ... gtggttttagGTCTGCCTCCACGATACAGAGATTCTGTTCGGGCCATTACTCCG
EST: TGTTTGCAACAATGATACCATGGCTGAGAATCTCAAGAGACA-CTCTTTG GTCTGCCTCCACGATACAGAGATTCTGTTCGGGCCATTACTCCGGG-TTGCEST: gi|151394581|gb|EV264452.1|EV264452
genomic: TGTTTGCAACAATGATACCATGGCTGAGAATCTCAAGAGACAACTCTTTGgtatgttcct ... gtggttttagGTCTGCCTCCACGATACAGAGATTCTGTTCGGGCCATTACTCCGGGGTTGC
EST: TGTTTGCAACAATGATACCATGGCTGAGAATCTCAAGAGACAACTCTTTG GTCTGCCTCCACGATACAGAGATTCTGTTCGGGC-ATTACTCCGGG-TTGCEST: gi|298169801|gb|HO018425.1|HO018425
genomic: TGTTTGCAACAATGATACCATGGCTGAGAATCTCAAGAGACAACTCTTTGgtatgttcct ... gtggttttagGTCTGCCTCCACGATACAGAGATTCTGTTCGGGCCATTACTCCGGGGTTGC
EST: TGTTTGCAACAATGATACCATGGCTGAGAATCTCAAGAGACAACTCTTTG GTCTGCCTCCACGATACGGAGATTCTGTTCGGGCCATTACTCCGGGGTTGC
genomic: TGTTTGCAACAATGATACCATGGCTGAGAATCTCAAGAGACAACTCTTTGgtatgttcct ... gtggttttagGTCTGCCTCCACGATACAGAGATTCTGTTCGGGCCATTACTCCGGGGTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCCCAGCAGAGTCTCTTCCTAGGAATGAAACCATTGGAGGCTACATCTTTGTTTGCAACAATGATACCATGGCTGAGAATCTCAAGAGACAACTCTTTGgtatgttccttaatttcctagttgagactcaattatgcaattgttatattcttattattatcatctaagatactatagacttcaggttttttaattgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA