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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGAAGGAAGAAGAGCTTGAAAACCGTGGCCGGGAGCAAGAGAAGCTTCAGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcacttcatctagcttatggatcttttcagttttatcatcgcgatctttgatattgtggaaaataggcaattggggcctatggtcgcagagatc...

Basic information

species Glycine max
transcript GLYMA08G02550.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02550.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv02s0025g01220.t01 (Vitis vinifera), 5'ss of exon 1
GCTGAAGGAAGAAGAGCTTGAAAACCGTGGCCGGGAGCAAGAGAAGCTTCAGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcacttcatctagcttatggatcttttcagttttatcatcgcg--atctttgatattgtggaaaataggcaattggggcctatggtcgcagagatc
| | ||||| |||||||| || |   | || || ||||| |||||||||||||  ||| | || ||||||||||||||||||||||| ||||| ||| ||||  |||  ||| || |   |      ||    |        | |       | |||| | |    ||| || |     |||      |  |     |    
GATCAAGGAGGAAGAGCTCGAGACAAGGGGTCGAGAGCAGGAGAAGCTTCAGATGGAGTTGAAGAAATTGCAGAAGTTGAAGGAGTTCAAACCCACCGTGgttcgttttcttgatttctttctccattcccccccccccccccctttttttgtgtttggtgtccaagaatattgaagtgtggaaaaagtaattttgaatt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208044943|gb|GD840163.1|GD840163
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAA
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAA
EST: gi|207699817|gb|GD681552.1|GD681552
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATG
EST: gi|208129203|gb|GD932843.1|GD932843
EST:     AGACCGAGCTCAAAAAATTGTAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATG
EST: gi|208109166|gb|GD901634.1|GD901634
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCACG                         AATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATA
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATA
EST: gi|193486431|gb|FK449621.1|FK449621
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AGTTTGCCTGTGTTGAAAGATAAT
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAAT
EST: gi|207718822|gb|GD700170.1|GD700170
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAGGAAGAAGAAG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAGAAG
EST: gi|193712787|gb|FK651000.1|FK651000
EST:     AGACCGAGCTCAAAAAATCGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATGAAGAAAAGA-GGATAAGAAGAAGAAG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAGAAG
EST: gi|193304016|gb|FK271151.1|FK271151
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGT
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGT
EST: gi|193319010|gb|FK283816.1|FK283816
EST:     GACCGAGCTCAAAAAATTGACAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTG
genomic: GACCGAGCTCAAAAAATTG-CAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTG
EST: gi|208258905|gb|GE055380.1|GE055380
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGAT
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGAT
EST: gi|208281910|gb|GE080148.1|GE080148
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATGAAGAAAA
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAGAAAA
EST: gi|208265466|gb|GE062658.1|GE062658
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAA
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAA
EST: gi|193382647|gb|FK347174.1|FK347174
EST:     AGACCGAGCTC-AAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATG
EST: gi|208178311|gb|GD978264.1|GD978264
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAAT
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAAT
EST: gi|208281066|gb|GE077260.1|GE077260
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTG
EST: gi|193302049|gb|FK266114.1|FK266114
EST:     AGACCGAGCTC-AAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATG
EST: gi|208318438|gb|GE110709.1|GE110709
EST:     AAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGAT---AAGAAGAAG
genomic: AAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAGAAG
EST: gi|193648471|gb|FK596168.1|FK596168
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGT
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGT
EST: gi|207764824|gb|GD738527.1|GD738527
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAGAGATAATGAAGAAAAGAAGGATAAGAAGAAGAAG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAGAAG
EST: gi|193683131|gb|FK623011.1|FK623011
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATGAAGAAACGAAGGATAAGAAGAAGAAG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAGAAG
EST: gi|208285906|gb|GE088274.1|GE088274
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTG
EST: gi|208079154|gb|GD877022.1|GD877022
EST:     GGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATG
EST: gi|193551001|gb|FK509368.1|FK509368
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATGAAGAAAAGA-GGATAAGAAGAAGAAG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAGAAG
EST: gi|193335146|gb|FK297942.1|FK297942
EST:     AAACCTACCATG                         AATTTGCCTGTGTTGAA
genomic: AAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAA
EST: gi|193300985|gb|FK265492.1|FK265492
EST:     AGACCGAGCTC-AAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGT
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGT
EST: gi|208260480|gb|GE058060.1|GE058060
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATG
EST: gi|208106237|gb|GD908384.1|GD908384
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAG
EST: gi|207703455|gb|GD685849.1|GD685849
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATGA-GAAAAGAAGGATAAGAAGAAGAAG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAGAAG
EST: gi|193557629|gb|FK516618.1|FK516618
EST:     AGACCGAGCTCAAAAAATCGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAG
EST: gi|208253811|gb|GE056447.1|GE056447
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTG
EST: gi|208244554|gb|GE038525.1|GE038525
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAGAGG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAGAAG
EST: gi|208101618|gb|GD899565.1|GD899565
EST:     AGACCGAGCTC-AAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTT
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTT
EST: gi|208108938|gb|GD907650.1|GD907650
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGGAGAAG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAGAAG
EST: gi|193687282|gb|FK633911.1|FK633911
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTG
EST: gi|208252668|gb|GE046162.1|GE046162
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGA-GAAG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAGAAG
EST: gi|193421431|gb|FK388722.1|FK388722
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATG
EST: gi|208229195|gb|GE024713.1|GE024713
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGAT
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGAT
EST: gi|208224741|gb|GE027568.1|GE027568
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATG
EST: gi|193701707|gb|FK641309.1|FK641309
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGGAGAAGAAG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAGAAG
EST: gi|193581307|gb|FK533630.1|FK533630
EST:     AGACCGAGCTC-AAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATGAAGAAAA
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAGAAAA
EST: gi|208194042|gb|GD989831.1|GD989831
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAG--G
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAGAAG
EST: gi|193300414|gb|FK265411.1|FK265411
EST:     AGACCGAGCTC-AAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAA
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAA
EST: gi|207812837|gb|GD784575.1|GD784575
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAGGAAGAAGAAG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAGAAG
EST: gi|208135466|gb|GD938369.1|GD938369
EST:     GACCGAAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATG
genomic: GACCG-AGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATG
EST: gi|207694987|gb|GD677070.1|GD677070
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTT
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTT
EST: gi|207694326|gb|GD677823.1|GD677823
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGT
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGT
EST: gi|208148158|gb|GD944188.1|GD944188
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTG
EST: gi|193687096|gb|FK630379.1|FK630379
EST:     AGACCGAGCTC-AAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTT
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTT
EST: gi|193355531|gb|FK319472.1|FK319472
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAG
EST: gi|193710988|gb|FK646943.1|FK646943
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGTTAATGAAGAAAAGAAGGATAAGAAGAAGAAG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAGAAG
EST: gi|208308411|gb|GE102895.1|GE102895
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTAAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATGAAGAAAAAGAAGG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAGAAAA-GAAGG
EST: gi|193638193|gb|FK586687.1|FK586687
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAGAGG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAGAAG
EST: gi|193301021|gb|FK265528.1|FK265528
EST:     AGACCGAGCTC-AAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTG
EST: gi|208241922|gb|GE041088.1|GE041088
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAG
EST: gi|193727735|gb|FK663735.1|FK663735
EST:     AGACCGAGCTC-AAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATGAAGAAAAG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAGAAAAG
EST: gi|6072596|gb|AW101983.1|AW101983
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATGAA
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAA
EST: gi|208043327|gb|GD840045.1|GD840045
EST:     AAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATGAA-AAAAGAAGGATAAGAAGAAGAAG
genomic: AAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAGAAG
EST: gi|208234053|gb|GE029554.1|GE029554
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATG
EST: gi|193311453|gb|FK274243.1|FK274243
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATGAAG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAG
EST: gi|207831071|gb|GD802945.1|GD802945
EST:     AGACCGAGCCCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTG
EST: gi|208113741|gb|GD911646.1|GD911646
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAAT
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAAT
EST: gi|193415672|gb|FK376278.1|FK376278
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAATTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATG
EST: gi|193592853|gb|FK548759.1|FK548759
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATA
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATA
EST: gi|193465533|gb|FK432466.1|FK432466
EST:     AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATG
genomic: AGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATG
EST: gi|208242958|gb|GE041550.1|GE041550
EST:     GACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTTAAACCTACCATG                         AATTTGCCTGTGTTGAAAGATAATG
genomic: GACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTT-AAACCTACCATGgtgagttcac ... tttttggtagAATTTGCCTGTGTTGAAAGATAATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGAAGGAAGAAGAGCTTGAAAACCGTGGCCGGGAGCAAGAGAAGCTTCAGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGgtgagttcacttcatctagcttatggatcttttcagttttatcatcgcgatctttgatattgtggaaaataggcaattggggcctatggtcgcagagatc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaata