Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACGACGCAGATGTCTCGAAGCAAATCCAGCAGATGGTGCGTTTCATCCGCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttcatttcattaccttcaccattttcccctctttcgtcgttttcaaactgaatcgtacttttccttctgcag

Basic information

species Glycine max
transcript GLYMA08G02390.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02390.2 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g46980.1 (Oryza sativa), 5'ss of exon 1
GAACGACGCAGATGTCTCGAAGCAAATCCAGCAGATGGTGCGTTTCATCCGCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttcatttcattaccttcaccattttcccctctttcgtcg--ttttcaaactgaatcgtacttttc-cttctgcag------------------
||||||||| |||||| | ||||| ||||||||||||||||| |||||||||||||| || |||||||| |||| ||||||||| || || ||||| |||||   |  | |   |    |   |  |   |  ||| |   |||||    |||     |  ||    |   | | || | ||                  
GAACGACGCCGATGTCGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGAGGAGAAGGCCAGCGAGATCTCCGTCTCCGCCGAGGAGgtcagtacttacccctcccctcgcctcgcctctcccccgcgcgtcgaagcttcgggaagcctctcgatccgcgcctccgaagcttttcacccgcccgatc

upper sequence: GLYMA08G02390.2 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G030167_T01 (Zea mays), 5'ss of exon 1
GAACGACGCAGATGTCTCGAAGCAAATCCAGCAGATGGTGCGTTTCATCCGCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttcatttcattac-cttcaccattttcccc---tctttcgtcgttttcaaactgaatcgtacttttccttctgcag-----------------
||| ||||| ||||| || ||||| ||||||||||||||||| |||||||||||||| || || ||||| |||||||||||||| || || ||||| |||||   | | |  | | |  | ||||  ||   |||      ||| |      ||| |  ||  |    || | |  || || |                 
GAATGACGCCGATGTATCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagtttaccctgcctgccgcttcctcaccctcctagaagcttccagaagcttctagatgcttgtctctgtactctcagctgcccgatctggctgacgc

upper sequence: GLYMA08G02390.2 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G070360_T01 (Zea mays), 5'ss of exon 1
GAACGACGCAGATGTCTCGAAGCAAATCCAGCAGATGGTGCGTTTCATCCGCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgt----ttctcttcatttcattaccttcaccattttcccctctttcgtcgttttcaaactgaatcgtacttttccttctgcag-----------------
||| ||||| |||||  | ||||| ||||||||||||||||| |||||||||||||| || || ||||| |||||||||||||| || || ||||| |||||    ||  ||||  | |     | ||||| |  |     ||| |        | |  ||  |    || | | ||| || |                 
GAATGACGCCGATGTAGCCAAGCAGATCCAGCAGATGGTGCGGTTCATCCGCCAGGAGGCCGACGAGAAGGCCAACGAGATCTCCGTCTCCGCCGAGGAGgtcagttttccttcgctgccgcttcctcaccctcctagaagcttccagaagcccctagatggttgcctctgtactttcagctgcccgatgtggctggcgc

upper sequence: GLYMA08G02390.2 (Glycine max), 5'ss of exon 1
lower sequence: AT4G11150.1 (Arabidopsis thaliana), 5'ss of exon 1
GAACGACGCAGATGTCTCGAAGCAAATCCAGCAGATGGTGCGTTTCATCCGCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgttt--ctcttcatttcattaccttcacc-attttcccctctttcgtcgttttcaaactgaatcgta--cttttccttctgcag-------------------------------
|||||||| |||||| |||| ||| ||||||||||||||| | || |||||||| ||||| || |||||||| ||||||||||| || ||||| ||||| || |     ||  | |   |   | ||   ||     | | |    |   | || || | |||||||  |  ||  |      |                               
GAACGACGGAGATGTATCGAGGCAGATCCAGCAGATGGTGAGATTTATCCGCCAAGAAGCGGAAGAGAAAGCAAACGAGATCTCGGTTTCTGCTGAAGAAgtatgatctttagtgtttctgtttccatttatcagatcttatgatatgaatctctaattcaatcgtaagcggtttatctgattgttatcgatttggtttatttgaataatcgtag

upper sequence: GLYMA08G02390.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 1
GAACGACGCAGATGTCTCGAAGCAAATCCAGCAGATGGTGCGTTTCATCCGCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtt--tctcttcatttcattaccttcaccattttcccctctttcgtcgttttcaaactgaatcgtacttttccttctgcag-------------------
|||||||||||||||||| ||||| ||||||||||||||| | ||||||||||| ||||| ||||| || || || || ||||||||||| |||||||| ||    ||  ||| |  | |   | | |  ||||  |   |    ||||||       | |   | |       || |  |                   
GAACGACGCAGATGTCTCCAAGCAGATCCAGCAGATGGTGAGATTCATCCGCCAAGAAGCGGAGGAAAAGGCGAATGAAATCTCTGTATCCGCCGAAGAAgtaagcctactcactcaaatgtgtactctcttttttctcttcggatcgtttggtgctaggaaattgcaagaaaatcagaggaaggaaaaaaaattaaaaa

upper sequence: GLYMA08G02390.2 (Glycine max), 5'ss of exon 1
lower sequence: PP1S269_15V6.1 (Physcomitrella patens), 5'ss of exon 1
GAACGACGCAGATGTCTCGAAGCAAATCCAGCAGATGGTGCGTTTCATCCGCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgttt--ctcttcatttcattaccttcaccattttcccctctttcgtcgttttcaaactgaatcgtacttttccttctgcag---------------------
|||||||   || || ||| ||||| |||||||||||||||  ||||| ||||||||||| |||||||| ||||| |||||||||||||||||||| |||||    |  |     || ||   | ||||     | | | |      ||||| | |  | |   ||  | |  |   | |                      
GAACGACATGGAGGTTTCGCAGCAAGTCCAGCAGATGGTGCAGTTCATACGCCAGGAAGCGGAGGAGAAGGCCAATGAGATCTCTGTATCTGCCGAGGAGgtaagaccatcaggctccttgaatccaccgg--gcacgtttgcaaatgtttttataggggagtttatctgttttggagaattcggacctcgaatcgacgttg

upper sequence: GLYMA08G02390.2 (Glycine max), 5'ss of exon 1
lower sequence: PP1S68_127V6.1 (Physcomitrella patens), 5'ss of exon 1
GAACGACGCAGATGTCTCGAAGCAAATCCAGCAGATGGTGCGTTTCATCCGCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgt----ttctcttcatt--tcattac--cttca--ccattttccc------ctctttcgtcgttttcaaactgaat--cgtacttttccttctgcag---
|||||||   || || ||||||||  |||||||||||||||  ||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||    |||| | || |   | ||     ||||  | ||| |          |  |   | ||    || ||||||  ||   |     |  |  ||   
GAACGACATTGAGGTTTCGAAGCAGGTCCAGCAGATGGTGCAGTTCATCCGCCAGGAAGCAGAGGAGAAGGCCAACGAGATCTCTGTATCTGCTGAAGAGgtgaagttctttacaatgtcccttgtggtttcaggcgattctgttgaggggtttctctattgtgaagaatctgaatgtcgagttaaaaatcttataggtt

upper sequence: GLYMA08G02390.2 (Glycine max), 5'ss of exon 1
lower sequence: EFJ17636 (Selaginella moellendorffii), 5'ss of exon 1
GAACGACGCAGATGTCTCGAAGCAAATCCAGCAGATGGTGCGTTTCATCCGCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttc-tcttcatttcattaccttcaccattttcccctctttcgtcgttttcaaactgaatcgtacttttccttctgcag--------------------
|||||| || || ||| | |||||  ||  |||||||||| | ||||||||||||||||| ||||||||||||||||||||||| || || || ||||||||    | ||| | || |   ||||    |   |      |   | | |       || || |    |||||||| |  |                    
GAACGATGCCGAGGTCGCCAAGCAGGTCGCGCAGATGGTGAGATTCATCCGCCAGGAAGCCGAGGAGAAAGCCAACGAGATCTCGGTCTCCGCAGAAGAGgtaaggttttcttctcctcctcttctttgtagacttggaataaattgatagatggatggatgggttctttccttcggtggagctgacattggatttccag

upper sequence: GLYMA08G02390.2 (Glycine max), 5'ss of exon 1
lower sequence: EFJ29103 (Selaginella moellendorffii), 5'ss of exon 1
GAACGACGCAGATGTCTCGAAGCAAATCCAGCAGATGGTGCGTTTCATCCGCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttc-tcttcatttcattaccttcaccattttcccctctttcgtcgttttcaaactgaatcgtacttttccttctgcag--------------------
|||||| || || ||| | |||||  ||  |||||||||| | ||||||||||||||||| ||||||||||||||||||||||| || || || ||||||||    | ||| | || |   ||||    |   |      |   | | |       || || |    ||||||||||  |                    
GAACGATGCCGAGGTCGCCAAGCAGGTCGCGCAGATGGTGAGATTCATCCGCCAGGAAGCCGAGGAGAAAGCCAACGAGATCTCGGTCTCCGCGGAAGAGgtaaggttttcttctcctcctcttctttgtagacttagaataaattgatagatggatggatgggttctttccttctgtggagctgacattggatttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120493334|gb|EH221501.1|EH221501
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|18848551|gb|BM567727.1|BM567727
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|10842860|gb|BF066209.1|BF066209
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|207720049|gb|GD702548.1|GD702548
EST:     GCCGGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCG
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCG
EST: gi|192325860|gb|FK018082.1|FK018082
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGGGACCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAG
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAG
EST: gi|12496453|gb|BG047072.1|BG047072
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|209729716|gb|BW669816.1|BW669816
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|213592584|gb|DB961844.1|DB961844
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|6341379|gb|AW164203.1|AW164203
EST:     GGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|19269876|gb|BM886132.1|BM886132
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|17022073|gb|BM093107.1|BM093107
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|213595223|gb|DB962362.1|DB962362
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|193522462|gb|FK477813.1|FK477813
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|193696729|gb|FK638389.1|FK638389
EST:     GGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|254344832|gb|GR855596.1|GR855596
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|26269429|gb|CA820492.1|CA820492
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|207787700|gb|GD761050.1|GD761050
EST:     GCCGGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|298184815|gb|HO030028.1|HO030028
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|193551030|gb|FK507927.1|FK507927
EST:     GGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|151393563|gb|EV263438.1|EV263438
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|26048381|gb|CA784877.1|CA784877
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|209720326|gb|BW669273.1|BW669273
EST:     GACAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCAGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|208273361|gb|GE066713.1|GE066713
EST:     TATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: TATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|26047921|gb|CA784561.1|CA784561
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|105633738|gb|DW247101.1|DW247101
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|19453218|gb|BM954628.1|BM954628
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|19934634|gb|BQ079664.1|BQ079664
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|298198695|gb|HO042058.1|HO042058
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|27809414|gb|CB063836.1|CB063836
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|22522158|gb|BU080969.1|BU080969
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|19269962|gb|BM886218.1|BM886218
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|208103778|gb|GD908109.1|GD908109
EST:     TATCTGCCGAAGAG                         GAATTCAATACCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: TATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|19935254|gb|BQ080284.1|BQ080284
EST:     GGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|298181349|gb|HO022788.1|HO022788
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAGTTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|208147392|gb|GD945325.1|GD945325
EST:     GAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|207738352|gb|GD716116.1|GD716116
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAG
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAG
EST: gi|192317055|gb|FK007836.1|FK007836
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|298177899|gb|HO021924.1|HO021924
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGGTCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|192329834|gb|FK023016.1|FK023016
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|192327864|gb|FK022437.1|FK022437
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|192331491|gb|FK022738.1|FK022738
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|209716815|gb|BW682257.1|BW682257
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|192317054|gb|FK007835.1|FK007835
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|192316066|gb|FK008891.1|FK008891
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|193416471|gb|FK384963.1|FK384963
EST:     TATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: TATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|209726264|gb|BW680201.1|BW680201
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|8669868|gb|BE190975.1|BE190975
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|298169479|gb|HO020839.1|HO020839
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|33387695|gb|CA850902.1|CA850902
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGNTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|207736783|gb|GD710366.1|GD710366
EST:     TATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: TATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|298163744|gb|HO012477.1|HO012477
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|7686055|gb|AW756703.1|AW756703
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|192304325|gb|FG996451.1|FG996451
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|10236269|gb|BE805157.1|BE805157
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATTTTGGGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|20812625|gb|BQ297103.1|BQ297103
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAGAAGAAGATC
EST: gi|193710836|gb|FK646903.1|FK646903
EST:     GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAAAGAAGAAGAT
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTTGAAGCCGAAAA-GAAGAAGAT
EST: gi|208197662|gb|GD998883.1|GD998883
EST:     GCCAGGAANCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAG                         GAATTCAGTATCGAGAAG
genomic: GCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACGACGCAGATGTCTCGAAGCAAATCCAGCAGATGGTGCGTTTCATCCGCCAGGAAGCTGAGGAGAAAGCCAACGAGATCTCTGTATCTGCCGAAGAGgtttctcttcatttcattaccttcaccattttcccctctttcgtcgttttcaaactgaatcgtacttttccttctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA