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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTACCGAGGCGGAAATTCGTCAACTCTGTGTTTCCTCCAAAGAGATCTTTCTCAGCCAACCTAATCTTCTCGAACTCGAGGCTCCTATTAAGATTTGTGgtatattttattgataattccgattaattgattcattgtaaccttgcttgttgttttattaattttttttttttgtgtaattgtgaattgtgatgtgtgg...

Basic information

species Glycine max
transcript GLYMA08G02180.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02180.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G11240.1 (Arabidopsis thaliana), 5'ss of exon 1
CTTACCGAGGCGGAAATTCGTCAACTCTGTGTTTCCTCCAAAGAGATCTTTCTCAGCCAACCTAATCTTCTCGAACTCGAGGCTCCTATTAAGATTTGTGgtatattttattgataattccgattaattgattcattgtaaccttgcttg--ttgttttattaattttttttttttgtgtaattgtgaattgtgatgtgtgg
 |||| ||| |||| || ||||| || ||| |  | || |||||| | |||||||| || |||||||| ||||| |||||||||||||| |||||||| |||| || ||| |||  |     | |  ||   ||  | ||   |  ||||  ||  ||| |   || |   ||||||   |||| |  ||| |    |||  
ATTACTGAGACGGAGATACGTCAGCTATGTTTAGCTTCAAAAGAGGTTTTTCTCAGTCAGCCTAATCTCCTCGAGCTCGAGGCTCCTATCAAGATTTGCGgta-atgttactgaatagag-aaatgtttctctctgtttactttatcttgaattcgtttttgtgttgtgggtttttgatcaattttacattttttgatgtaa

upper sequence: GLYMA08G02180.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G64040.1 (Arabidopsis thaliana), 5'ss of exon 1
CTTACCGAGGCGGAAATTCGTCAACTCTGTGTTTCCTCCAAAGAGATCTTTCTCAGCCAACCTAATCTTCTCGAACTCGAGGCTCCTATTAAGATTTGTGgtatattttattgataattccgattaattgattcattgtaaccttgcttgttgttttattaattttttttttttgtgtaattgtgaattgtgatgtgtgg
 | || ||||| || |||   || || |||  | || | ||  ||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||   ||  | |   ||    |    |  |  | | |    ||    |  | |||    |  || | |||   | |   |   | | | |||   |  
TTGACGGAGGCTGAGATTAAACATCTTTGTTCTACCGCTAAGCAGATCTTTCTCACTCAACCTAATCTTCTTGAACTCGAGGCTCCTATTAAGATTTGTGgtattcattcatcaattttgttctctcctcttcaaattttcttttctacgaggatttgcgtagattatgtttgattatccatagaactagagattgatta

upper sequence: GLYMA08G02180.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S97_286V6.1 (Physcomitrella patens), 5'ss of exon 2
CTTACCGAGGCGGAAATTCGTCAACTCTGTGTTTCCTCCAAAGAGATCTTTCTCAGCCAACCTAATCTTCTCGAACTCGAGGCTCCTATTAAGATTTGTGgtatattttattgataattccgattaattgattcattgtaaccttgcttgttgttttattaattttttttttttgtgtaa--ttgtgaattgtgatgtgtgg
||  | ||||| ||||| ||||| ||||||||| | || || || || ||| |   ||| |||||||||||||| ||||||||||| ||||||||||||||| |    |     |    | |  |   | |||||  ||   |   |  || ||  |    |  | |||   | ||   |  | ||  | |  |   | |  
CTGTCGGAGGCTGAAATCCGTCAGCTCTGTGTTGCATCGAAGGACATATTTTTGTCCCAGCCTAATCTTCTCGAGCTCGAGGCTCCAATTAAGATTTGTGgtttgccctga-acttgcactgcgtccgtcattcaacgtctacacaccagtcgtcgtgacgacatgtttgagtagtacgagatagttgaataggtctttta-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209707774|gb|BW683666.1|BW683666
EST:     TCTCAGCCAACCTAATCTTCTCGAACTCGAGGCTCCTATTAAGATTTGTG                         GAGATGTTCATGGCCAATACTCAGATCTTTTAAGGCTGTTCGAATATGGGG
genomic: TCTCAGCCAACCTAATCTTCTCGAACTCGAGGCTCCTATTAAGATTTGTGgtatatttta ... tcatttgcagGAGATGTTCATGGCCAATACTCAGATCTTTTAAGGCTGTTCGAATATGGGG
EST: gi|19347191|gb|BM892071.1|BM892071
EST:     TCTCAGCCAACCTAATCTTCTCGAACTCGAGGCTCCTATTAAGATTTGTG                         GAGATGTTCATGGCCAATACTCAGATCTTTTAAGGCTGTTCGAATATGGGG
genomic: TCTCAGCCAACCTAATCTTCTCGAACTCGAGGCTCCTATTAAGATTTGTGgtatatttta ... tcatttgcagGAGATGTTCATGGCCAATACTCAGATCTTTTAAGGCTGTTCGAATATGGGG