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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGGGGGAACTGACAACGGAAATGGGTTTCCTCGGgcaggtgttaaccaaagagaagtttcactggcttctctctaatgaaatggttatttcaattttttgttggcctactctttacgcaagactagattttggtatggtttcag

Basic information

species Glycine max
transcript GLYMA08G01800.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193490545|gb|FK453388.1|FK453388
EST:     AACTGACAACGGAAATGGGTTTCCTCGG                         GTAGCCAGCAGCTTGTGTCTCTGGTGAAGTGGATAAATGCGGTGCTTCCTA
genomic: AACTGACAACGGAAATGGGTTTCCTCGGgcaggtgtta ... atggtttcagGTAGCCAGCAGCTTGTGTCTCTGGTGAAGTGGATAAATGCGGTGCTTCCTA
EST: gi|193422084|gb|FK386757.1|FK386757
EST:     GAGAGGGGGAACTGACAACGGAAATGGGTTTCCTCGGGCAG                      
genomic: GAGAGGGGGAACTGACAACGGAAATGGGTTTCCTC--G--Ggcaggtgtta ... atggttt
EST: gi|208181415|gb|GD974668.1|GD974668
EST:     GAGAGGGGGAACTGACAACGGAAATGGGTTTCCTCGGGCAG                      
genomic: GAGAGGGGGAACTGACAACGGAAATGGGTTTCCTC--G--Ggcaggtgtta ... atggttt