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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCGTCTATGAAGCTTGCCGTAGAATGGCTGCTCGCAAAGTAGATGCTCTGTTACTCACTGATTCCAATGCTTTGCTCTGTGGAATCCTCACAGACAAGgtaagtattggacttctttttatgactcatgcagaagaaacaagaaaatagactatagtattgggacttttgtttgaatttgtgcagtttttacttaaatttacatacataacttgctattctaattttgtggttaaag

Basic information

species Glycine max
transcript GLYMA08G01470.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G01470.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G133621_T02 (Zea mays), 5'ss of exon 2
AACCGTCTATGAAGCTTGCCGTAGAATGGCTGCTCGCAAAGTAGATGCTCTGTTACTCACTGATTCCAATGCTTTGCTCTGTGGAATCCTCACAGACAAGgtaagtattggacttctttttatgactcatgcagaagaaacaagaaaatagactatagtattgggacttttgtttgaatttgtgcagtttttacttaaatttacatacataacttgctattctaattttgtggttaaag
 |||||  | || ||||| || || |||||  | ||||  ||||||||  ||||||| || || |||||||||||||||||||| ||||| || |||||||| ||     | ||  |  ||  |  |  |             |    |  ||| |  ||  |  |||     | || |   |  |     ||   ||||||||  |  || ||                         
GACCGTGCACGAGGCTTGTCGGAGGATGGCATCACGCAGGGTAGATGCCGTGTTACTGACCGACTCCAATGCTTTGCTCTGTGGGATCCTTACCGACAAGgtgag----aggctgttccttcgggttttttttc---------gtctctctactgtcttagagcaactccaagt-gattagctaaaaagactaaccaaatttaccgatttagct-------------------------

upper sequence: GLYMA08G01470.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G171622_T01 (Zea mays), 5'ss of exon 2
AACCGTCTATGAAGCTTGCCGTAGAATGGCTGCTCGCAAAGTAGATGCTCTGTTACTCACTGATTCCAATGCTTTGCTCTGTGGAATCCTCACAGACAAGgtaagtattggacttctttttatgactcatgcagaagaaacaagaaaatagactatagtattgggacttttgtttgaatttgtgcagtttttacttaaatttacatacataacttgctattctaattttgtggttaaag
||||||  | || ||||| || || |||||  | ||||  || || ||  || | || ||||| ||||| |||||||||||||| |||||||| |||||||| ||    |||  |   ||      |  |   |    |         ||||   |   |||      | | |      || ||       |  | |                                          
AACCGTGCACGAGGCTTGTCGGAGGATGGCGTCACGCAGGGTTGACGCCGTGCTGCTGACTGACTCCAACGCTTTGCTCTGTGGGATCCTCACCGACAAGgtgagg---ggatgttccttcgctttttttttcgtgtcagtgccgccttagatgttcccatttctcactgtatgctgtattttgggaacgctggtcag-----------------------------------------

upper sequence: GLYMA08G01470.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 3
AACCGTCTATGAAGCTTGCCGTAGAATGGCTGCTCGCAAAGTAGATGCTCTGTTACTCACTGATTCCAATGCTTTGCTCTGTGGAATCCTCACAGACAAGgtaagtattggacttctttttatgactcatgcagaagaaacaagaaaatagactatagtattgggacttttgtttgaatttgtgcagtttttacttaaatttacatacataacttgctattctaattttgtggttaaag
||   | ||||||||||||||  | ||||||||||| | ||| |||||  | ||  | |||||||| ||||| || || ||||||||||| |||||||||||  |  ||| | | |   |  |||   || | |   |  ||| ||||       | | || |  || |||   || |||| |   | ||| ||||    || || | |       | ||||   |||||||| | |||
AAGTATTTATGAAGCTTGCCGCCGTATGGCTGCTCGTAGAGTTGATGCCTTATTGTTAACTGATTCAAATGCGTTACTTTGTGGAATCCTTACAGACAAGgtttgacttgaattac---tagtgagatatactgccaagccaaaaaaac------ttgcat-gctacatttacctggatttttatggcttt-acttg---tttcacaaa------accattccc-ttttgtggctgaag