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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTCCCCCGCTCTTCGGAGCTCTCCTCACGTCACATTCCGCCGCCGAATCTCCTTCTCCTCTTTTCCCCGGCGTTTCTCCGCCAGCTCCACCTCCCGAGgtacgcgaactgcgcttatttggcgtcagattttactgttggaaactgaaattgtttacttacttggggctttgcag

Basic information

species Glycine max
transcript GLYMA08G00380.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193706376|gb|FK648870.1|FK648870
EST:     CTCCTTCTCCTCTTTTCCCCGGCGTTTCTCCGCCAGCTCCACCTCCCGAG                         AGGTGGAATATGAATTGGGATTGGATGAGAAGTATGA
genomic: CTCCTTCTCCTCTTTTCCCCGGCGTTTCTCCGCCAGCTCCACCTCCCGAGgtacgcgaac ... ggctttgcagAGGTGGAATATGAATTGGGATTGGATGAGAAGTATGA
EST: gi|193726588|gb|FK658556.1|FK658556
EST:     CTCCTTCTCCTCTTTTCCCCGGCGTTTCTCCGCCAGCTCCACCTCCCGAG                         AGGTGGAAATANGAATTGGGATTGGATGAGAAGTATGA
genomic: CTCCTTCTCCTCTTTTCCCCGGCGTTTCTCCGCCAGCTCCACCTCCCGAGgtacgcgaac ... ggctttgcagAGGTGGAA-TATGAATTGGGATTGGATGAGAAGTATGA
EST: gi|193709676|gb|FK642570.1|FK642570
EST:     CTCCTTCTCCTCTTTTCCCCGGCGTTTCTCCGCCAGCTCCACCTCCCGAG                         AGGTGGAATATGAATTGGGATTGGATGAGAAGTATGATGTG
genomic: CTCCTTCTCCTCTTTTCCCCGGCGTTTCTCCGCCAGCTCCACCTCCCGAGgtacgcgaac ... ggctttgcagAGGTGGAATATGAATTGGGATTGGATGAGAAGTATGATGTG
EST: gi|6070526|gb|AW099913.1|AW099913
EST:     CTCCTTCTCCTCTTTTCCCCGGCGTTTCTCCGCCAGCTCCACCTCCCGAG                         AGGTGGAATATGAATTGNGATTGGATGAGAAGTATGATGTGATTGTAGTTG
genomic: CTCCTTCTCCTCTTTTCCCCGGCGTTTCTCCGCCAGCTCCACCTCCCGAGgtacgcgaac ... ggctttgcagAGGTGGAATATGAATTGGGATTGGATGAGAAGTATGATGTGATTGTAGTTG
EST: gi|193500500|gb|FK464045.1|FK464045
EST:     CTCCTTCTCCTCTTTTCCCCGGCGTTTCTCCGCCAGCTCCACCTCCCGAG                         AGGTGGAATATGAATTGGGATTGGATGAGAAGTATGA
genomic: CTCCTTCTCCTCTTTTCCCCGGCGTTTCTCCGCCAGCTCCACCTCCCGAGgtacgcgaac ... ggctttgcagAGGTGGAATATGAATTGGGATTGGATGAGAAGTATGA
EST: gi|213595258|gb|DB963991.1|DB963991
EST:     CTCCTTCTCCTCTTTTCCCCGGCGTTTCTCCGCCAGCTCCACCTCCCGAG                         AGGTGGAATATGAATTGGGATTGGATGAGAAGTATGATGTGATTGTAGTTG
genomic: CTCCTTCTCCTCTTTTCCCCGGCGTTTCTCCGCCAGCTCCACCTCCCGAGgtacgcgaac ... ggctttgcagAGGTGGAATATGAATTGGGATTGGATGAGAAGTATGATGTGATTGTAGTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCTCCCCCGCTCTTCGGAGCTCTCCTCACGTCACATTCCGCCGCCGAATCTCCTTCTCCTCTTTTCCCCGGCGTTTCTCCGCCAGCTCCACCTCCCGAGgtacgcgaactgcgcttatttggcgtcagattttactgttggaaactgaaattgtttacttacttggggctttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC