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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATTCTATGCGCCAAGCCGCCGCCGTCCTCGCCGACGAAGATGTCGACAACTACAAGCGCCCTTCCACTTTCCTCAATGTCGTTGCGCTCGGCAATGTCgtaagtttttcttctctctacaatatcaatcaatcaatcatggcacatgacacactctttctattcacatatgttatttgttgtgttggattggatccgttacaattgcggtggtggactggatcag

Basic information

species Glycine max
transcript GLYMA07G40300.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40300.2 (Glycine max), 5'ss of exon 1
lower sequence: AT1G10290.1 (Arabidopsis thaliana), 5'ss of exon 1
CGATTCTATGCGCCAAGCCGCCGCCGTCCTCGCCGACGAAGATGTCGACAA---------CTACAAGCGCCCTTCCACTTTCCTCAATGTCGTTGCGCTCGGCAATGTCgtaagtttttcttctctctacaatatcaatcaatcaatcatggcacatgacacactctttctattcacatatgttatttgttgtgttggattggatccgttacaattgcggtggtggactggatcag
         |   || || ||  |  |||||||||||||||||  |||| |          | |||||||||| ||||||||||||| ||||||||  | || ||||| || |||   || || ||||       || || | |  || | |   ||    | ||||||    ||      ||| | |  |||||| || || ||  |||   |||||  |   |           
---------GAAGCAGGCGGCGTCTCTCCTCGCCGACGAAGATCCCGACGAAACCTCTTCTTCCAAGCGCCCTGCCACTTTCCTCAACGTCGTTGCCTTGGGAAATGTGgtgagt---tcctcgctct-------cactcca-cgctcctcg---attttcctctctttaggctcgtgctggttttattctgtgttcgagtgtat--gttg-gattgccatatcgt----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20448755|gb|BQ252879.1|BQ252879
EST:     ACTACAAGCGCCCTTCCACTTTCCTCAATGTCGTTGCGCTCGGCAATGTC                         GGTGCTGGAAAATCTGCTTCCTTGAATAGCCTCATTGGACATCCTGTTTTG
genomic: ACTACAAGCGCCCTTCCACTTTCCTCAATGTCGTTGCGCTCGGCAATGTCgtaagttttt ... actggatcagGGTGCTGGAAAATCTGCTTCCTTGAATAGCCTCATTGGACATCCTGTTTTG