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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCATCAGTATCAATTTCTGATCCATTTTCTTTCCTAGGGTTCCGTTCCGCTTCTTCTCGCCGTTAGCATTTCGACTCTGCGCAATTCAAAACAATCAGgttttgcactgctactcacactgttaatctaggttttcgcatcgcatatctgattttttttatcaactatgtttcttcgctacttctcag

Basic information

species Glycine max
transcript GLYMA07G40230.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213610988|gb|DB970915.1|DB970915
EST:     GCTTCTTCTCGCCGTTAGCATTTCGACTCTGCGCAATTCAAAACAATCAG                         ATTTGACGCTAGTCACAAACTTGTGGAAACATGTACAACCTAGCTTTGACT
genomic: GCTTCTTCTCGCCGTTAGCATTTCGACTCTGCGCAATTCAAAACAATCAGgttttgcact ... tacttctcagATTTGACGCTAGTCACAAACTTGTGGAAACATGGCCAATCTAGCTTTGACT
EST: gi|208148790|gb|GD945436.1|GD945436
EST:     GCTTCTTCTCGCCGTTAGCATTTCGACTCTGCGCAATTCAAAACAATCAG                         ATTTGACGCTAGTCACAAACTTGTGGAAACATGGCCAATCTAGCTTTGACT
genomic: GCTTCTTCTCGCCGTTAGCATTTCGACTCTGCGCAATTCAAAACAATCAGgttttgcact ... tacttctcagATTTGACGCTAGTCACAAACTTGTGGAAACATGGCCAATCTAGCTTTGACT
EST: gi|213600096|gb|DB964302.1|DB964302
EST:     GCTTCTTCTCGCCGTTAGCATTTCGACTCTGCGCAATTCAAAACAATCAG                         ATTTGACGCTAGTCACAAACTTGTGGAAACATGGCCAATCTAGCTTTGACT
genomic: GCTTCTTCTCGCCGTTAGCATTTCGACTCTGCGCAATTCAAAACAATCAGgttttgcact ... tacttctcagATTTGACGCTAGTCACAAACTTGTGGAAACATGGCCAATCTAGCTTTGACT
EST: gi|213613547|gb|DB963263.1|DB963263
EST:     GCTTCTTCTCGCCGTTAGCATTTCGACTCTGCGCAATTCAAAACAATCAG                         ATTTGACGCTAGTCACAAACTTGTGGAAACATGGCCAATCTAGCTTTGACT
genomic: GCTTCTTCTCGCCGTTAGCATTTCGACTCTGCGCAATTCAAAACAATCAGgttttgcact ... tacttctcagATTTGACGCTAGTCACAAACTTGTGGAAACATGGCCAATCTAGCTTTGACT
EST: gi|209717236|gb|BW657705.1|BW657705
EST:     GCTTCTTCTCGCCGTTAGCATTTCGACTCTGCGCAATTCAAAACAATCAG                         ATTTGACGCTAGTCACAAACTTGTGGAAACATGGCCAATCTAGCTTTGACT
genomic: GCTTCTTCTCGCCGTTAGCATTTCGACTCTGCGCAATTCAAAACAATCAGgttttgcact ... tacttctcagATTTGACGCTAGTCACAAACTTGTGGAAACATGGCCAATCTAGCTTTGACT
EST: gi|208127225|gb|GD925741.1|GD925741
EST:     GCTTCTTCTCGCCGTTAGCATTTCGACTCTGCGTAATTCAAAACAATCAG                         ATTTGACGCTAGTCACAAACTTGTGGAAACATGGCCAA
genomic: GCTTCTTCTCGCCGTTAGCATTTCGACTCTGCGCAATTCAAAACAATCAGgttttgcact ... tacttctcagATTTGACGCTAGTCACAAACTTGTGGAAACATGGCCAA
EST: gi|213619876|gb|DB971135.1|DB971135
EST:     GCTTCTTCTCGCCGTTAGCATTTCGACTCTGCGCAATTCAAAACAATCAG                         ATTTGACGCTAGTCACAAACTTGTGGAAACATGGCCAACCTAGCTTTGACT
genomic: GCTTCTTCTCGCCGTTAGCATTTCGACTCTGCGCAATTCAAAACAATCAGgttttgcact ... tacttctcagATTTGACGCTAGTCACAAACTTGTGGAAACATGGCCAATCTAGCTTTGACT
EST: gi|208179645|gb|GD977932.1|GD977932
EST:     GCTTCTTCTCGCCGTTAGCATTTCGACTCTGCGCAATTCAAAACAATCAG                         ATTTGACGCTAGT
genomic: GCTTCTTCTCGCCGTTAGCATTTCGACTCTGCGCAATTCAAAACAATCAGgttttgcact ... tacttctcagATTTGACGCTAGT