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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTATGGAAGGAGTACCGCACCCAATACCCAGAACTGTCGAAGAGGTTTTCACCGATTTTAAGGGCAGACGCGCTGGTTTGATTAAGGCCCTCACTACTGgtacgctactctttcgccctttcctcctttttattcttttattatttatattcttttttattttacactctcttcttctcttgcttgcag

Basic information

species Glycine max
transcript GLYMA07G40170.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40170.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv12s0035g01980.t01 (Vitis vinifera), 5'ss of exon 1
CTTATGGAAGGAGT---ACCGCACCCAATACCCAGAACTGTCGAAGAGGTTTTCACCGATTTTAAGGGCAGACGCGCTGGTTTGATTAAGGCCCTCACTACTGgtacgctactctttcgccctttcctcctttttattcttttattatttatattcttttttattttacactctcttcttctcttgcttgcag---------------------------------
   ||||| ||| |   ||| |||||  ||||||||||||| |||||||| |||| |||||  |  |||||||| || || ||||| ||||||||||| || ||| || |     |   | || |     | | |     |   ||  |  | || |||| | ||||   ||   ||  |   |   |||  |                                 
---ATGGAGGGACTGCCACCACACCCGGTACCCAGAACTGTTGAAGAGGTCTTCAGCGATTACAGAGGCAGACGTGCCGGCTTGATCAAGGCCCTCACCACCGgttcgtttgctctcttctctgtgtatatatatgcatatggttttctgttgtttttttgtgttttttccttgttttgttcgtattttgatgattttgttgaatgggtgtttgtgggtattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298198567|gb|HO040106.1|HO040106
EST:     CACCGATTTTAAGGGCAGACGCGCTGGTTTGATTAAGGCCCTCACTACTG                         ACGTTGAAAAGCTTTACCAGCAGTGCGATCCCG
genomic: CACCGATTTTAAGGGCAGACGCGCTGGTTTGATTAAGGCCCTCACTACTGgtacgctact ... ttgcttgcagACGTTGAAAAGTTTTACCAGCAGTGCGATCCCG
EST: gi|209720056|gb|BW659455.1|BW659455
EST:     CACCGA-TTTAAGGGCAGACGCGCTGGTTTGATTAAGGCCCTCACTACTG                         ACGTTGAAAAGTTTTACCAGCAGTGCGATCCCG
genomic: CACCGATTTTAAGGGCAGACGCGCTGGTTTGATTAAGGCCCTCACTACTGgtacgctact ... ttgcttgcagACGTTGAAAAGTTTTACCAGCAGTGCGATCCCG