1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TCTTCAGTTCCGAAGATGAAAACAGTTTCCGATTGGATCGATTCGTGTTCGAAAGAGCAATTGAAGACTTACCAGGACTGGTTCAACTTAGCCGACTCAGgttttgctgcttcgcttcatttcattctccatttcctttcggttacaactcattcttttgtctttgatcgtag
species | Glycine max |
transcript | GLYMA07G39450.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAAAGAGCAATTGAAGACTTACCAGGACTGGTTCAACTTAGCCGACTCAG ACGGAGATGGCCGCATCACTGGAAATGATGCAACCAAACTCTTTGCTCTCTEST: gi|298174570|gb|HO017793.1|HO017793
genomic: GAAAGAGCAATTGAAGACTTACCAGGACTGGTTCAACTTAGCCGACTCAGgttttgctgc ... ttgatcgtagACGGAGATGGCCGCATCACTGGAAATGATGCAACCAAATTCTTTGCTCTCT
EST: GAAAGAGCAATTGAAGACTTACCAGGACTGGTTCAACTTAGCCGACTCAG ACGGAGATGGCCGCATCACTGGAAATGATGCAACCAAATTCTTTGCTCTCTEST: gi|7146390|gb|AW508312.1|AW508312
genomic: GAAAGAGCAATTGAAGACTTACCAGGACTGGTTCAACTTAGCCGACTCAGgttttgctgc ... ttgatcgtagACGGAGATGGCCGCATCACTGGAAATGATGCAACCAAATTCTTTGCTCTCT
EST: GAAAGAGCAATTGAAGACTTACCAGGACTGGTTCAACTTAGCCGACTCAG ACGGAGATGGCCGCATCACTGGAAATGATGCAACCAAATTCTTTGCTCTCT
genomic: GAAAGAGCAATTGAAGACTTACCAGGACTGGTTCAACTTAGCCGACTCAGgttttgctgc ... ttgatcgtagACGGAGATGGCCGCATCACTGGAAATGATGCAACCAAATTCTTTGCTCTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTCAGTTCCGAAGATGAAAACAGTTTCCGATTGGATCGATTCGTGTTCGAAAGAGCAATTGAAGACTTACCAGGACTGGTTCAACTTAGCCGACTCAGgttttgctgcttcgcttcatttcattctccatttcctttcggttacaactcattcttttgtctttgatcgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA