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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTAGCAATGGCATCCCTCCCAAATCGTTCGACTACGATTTGCTTATTATCGGCGCCGGCGTTGGCGGCCACGGCGCCGCGCTTCATGCCGTCGAGAAGgttcgatctcagaaaacaaaactacatgcctacttgttaatgcgggatgcatactttgataaattgataatcatagttgttactaagttactaaaccgaa...

Basic information

species Glycine max
transcript GLYMA07G37050.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G37050.2 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os05g06460.1 (Oryza sativa), 5'ss of exon 1
TTCTAGCAATGGCATCCCTCC---CAAATCGTTCGACTACGATTTGCTTATTATCGGCGCCGGCGTTGGCGGCCACGGCGCCGCGCTTCATGCCGTCGAGAAGgttcgatctcagaaaa--caaaactacatgcctacttgttaatgcgggatgcatactttgataaattgataatcatagttgttactaagttactaaaccgaa
       || ||| |  |      |     ||||||||||||  |  | || ||||||||||||||||| || |||||||| ||||| || || |||||| ||||  |  |  |  |     |    |   ||   |  | |    |      |    |   | |  |    | ||| || |      | |  |  | | | | |
---GGAGAACGGCGTGGCGGGGAGCGGCGGGTTCGACTACGACCTCGTCATCATCGGCGCCGGCGTTGGTGGGCACGGCGCGGCGCTCCACGCTGTCGAGGAGgtaagtgcggaccatgtttactgttcggtgtagagctctagccgtttctcgtcggcggcgctgtacccgtgatc-tattgacatttgaactgatga-ctgta

upper sequence: GLYMA07G37050.2 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G145595_T02 (Zea mays), 5'ss of exon 1
TTCTAGCAATGGCATCCCTCC---CAAATCGTTCGACTACGATTTGCTTATTATCGGCGCCGGCGTTGGCGGCCACGGCGCCGCGCTTCATGCCGTCGAGAAGgttcgatctcagaaaacaaaactacatgcctacttgttaatgcgggatgcatactttgataaattgataatcatagttgttactaagttac---taaaccgaa-
   | ||||||||    |  |   |    |||||||||||||  |  | || ||||| || ||||| ||||||||||||||||| || ||||| |||||||||||| | ||     |  |    || || | |    |     || |  ||  ||  | || |   |     |   | || ||||    || |    || | |||| 
---TGGCAATGGCGCGGCCGCGAGCGGCACGTTCGACTACGACCTCGTGATCATCGGAGCTGGCGTCGGCGGCCACGGCGCCGCCCTCCATGCAGTCGAGAAGgttggttccgctcaggctgttctgcaggtcacgctaggggtgtgtaata-atg-tatggtggtt--gccactgtcgtcgttatctggtcaaatgtacatcgaaa