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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGAATCCAGTCACCCTCAGTGGCACCACGGAGCCTTCCACGACGTACGAGACAGCGTCCGATCCGACGTTCGCCGCATGCTTCACTCTCGCGCCGAGgtcatttttctttttccgtcaacacaaaaatcaaaatcactatccaattaattgatgtgtgaatgcatgtgtctgtggttcgtgtag

Basic information

species Glycine max
transcript GLYMA07G36730.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G36730.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g19690.2 (Oryza sativa), 5'ss of exon 1
GAGAGAATCCAGTCACCCTCAGTGGCACCACGGAGCCTTCCACGACGTACGAGACAGCGTCCGATCCGACGTTCGCCGCATGCTTCACTCTCGCGCCGAGgtcattttt---------ctttttccgtcaacacaaaaatcaaaatcactatccaattaattgatgtgtgaatgcatgtgtctgtggttcgtgtag-----
  | ||  || | ||||| |||||||||||||| || |||||||||||    |||||||||||  ||||||| ||||||||||| ||| | ||||| ||||| | ||           || |   |  |  | |     ||     | |   ||  | |||   | |  |   |||   |  ||  |  |||  |      
CCGGGATCCCGGCCACCCGCAGTGGCACCACGGCGCTTTCCACGACGTCGAGGACAGCGTCCGCGCCGACGTGCGCCGCATGCTCCACACGCGCGCAGAGgtaacttactcatcgtcactctcatccccccctcgtcgctcgtcggctccccccgttaaatctctct-cgcccgcacacgagtggcgcacgtcgacagagg

upper sequence: GLYMA07G36730.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G16180.2 (Arabidopsis thaliana), 5'ss of exon 1
GAGAGAATCCAGTCACCCTCAGTGGCACCACGGAGCCTTCCACGACGTACGAGACAGCGTCCGATCCGACGTTCGCCGCATGCTTCACTCTCGCGCCGAGgt-catttttctttttccgtcaacacaaaaatcaaaatcactatccaattaattgatgtgtgaatgcatgtgtctgtggttcgtgtag-------------
  | ||  |  |||| ||||| ||||| ||| | || ||||  ||||||||||| || || |||||||| || ||||| ||||||||||| || |||||||| || | | |   ||   | |    ||  ||||  ||||  ||| | ||| |     | |   |  | |     |  |      | |             
TCGCGAGCCAGGTCATCCTCACTGGCATCACAGTGCTTTCCTTGACGTACGAGAGAGTGTTCGATCCGATGTCCGCCGTATGCTTCACTCCCGTGCCGAGgtacaatctccagcttaaattatgtgaatcatcatcatcatcatc-agttagtctgaatttagctagaagaagaaggagaagaaatcgttgagtaatttgg

upper sequence: GLYMA07G36730.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv05s0077g00820.t01 (Vitis vinifera), 5'ss of exon 1
GAGAGAATCCAGTCACCCTCAGTGGCACCACGGAGCCTTCCACGACGTACGAGACAGCGTCCGATCCGACGTTCGCCGCATGCTTCACTCTCGCGCCGAGgt---catttttctttt------tccgtcaacacaaaaatcaaaatcactatccaatta--attgatgtgtgaatgcatgtgtctgtggttcgtgtag--
| ||||  |  | || ||||||||||||||||| || || ||||| ||  |||| || |||||||| || |||||||||||||| ||  | || ||||||||   | | || | |||      || |  |   ||| ||    ||  | | |  ||  |  ||  || |  || |     ||  |  | |||   ||   
GCGAGACCCGGGGCATCCTCAGTGGCACCACGGGGCTTTTCACGAGGTCAGAGATAGTGTCCGATCTGATGTTCGCCGCATGCTCCATACGCGTGCCGAGgtattcgtcttccctttggttgctcggaaactgcaagaaaatgaaggaatgttaaaagattatgaatcttcgatttttgatgcttcagattcacttaatc