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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGAGGCTTCCGTCGATCCCGATATCGTACGAGACGAAATCGAAGAACAACCCGAGGAAGAAGAAGATGGAGAGGATCTTTACAATGACAACTTTTTGGAgttagtcttctgtttttactttctctttttccatctcctcggaaaaccctaattcatttggcccttacaacttttcag

Basic information

species Glycine max
transcript GLYMA07G36680.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193357220|gb|FK321536.1|FK321536
EST:     CCCGAGGAAGAAGAAGATGGAGAGGATCTTTACAATGACAACTTTTTGGA                         TGATTATAAGAGAATGG
genomic: CCCGAGGAAGAAGAAGATGGAGAGGATCTTTACAATGACAACTTTTTGGAgttagtcttc ... aacttttcagTGATTATAAGAGAATGG
EST: gi|193312409|gb|FK276137.1|FK276137
EST:     CCCGAGGAAGAAGAAGATGGAGAGGATCTTTACAATGACAACTTTTTGGA                         TGATTATAAGAGAATGGATGAAGCTGACCAGTTCGAATCGTTTGGGCTGGA
genomic: CCCGAGGAAGAAGAAGATGGAGAGGATCTTTACAATGACAACTTTTTGGAgttagtcttc ... aacttttcagTGATTATAAGAGAATGGATGAAGCTGACCAGTTCGAATCGTTTGGGCTGGA
EST: gi|193526755|gb|FK484995.1|FK484995
EST:     CCCGAGGAAGAAGAAGATGGAGAGGATCTTTACAATGACAACTTTTTGGA                         TGATTATAAGAGAATGGATGAAGCTGACCAGTTCGAATCGTTTGGGCTGGA
genomic: CCCGAGGAAGAAGAAGATGGAGAGGATCTTTACAATGACAACTTTTTGGAgttagtcttc ... aacttttcagTGATTATAAGAGAATGGATGAAGCTGACCAGTTCGAATCGTTTGGGCTGGA
EST: gi|208274348|gb|GE071550.1|GE071550
EST:     CCCGAGGAAGAAGAAGATGGAGAGGATCTTTACAATGACAACTTTTTGGA                         TGATTATAAGAGAATGGATGAAGCTGACCAG
genomic: CCCGAGGAAGAAGAAGATGGAGAGGATCTTTACAATGACAACTTTTTGGAgttagtcttc ... aacttttcagTGATTATAAGAGAATGGATGAAGCTGACCAG
EST: gi|209706519|gb|BW667796.1|BW667796
EST:     CCCGAGGAAGAAGAAGATGGAGAGGATCTTTACAATGACAACTTTTTGGA                         TGATTATAAGAGAATGGATGAAGCTGACCAGTTCGAATCGTTTGGGCTGGA
genomic: CCCGAGGAAGAAGAAGATGGAGAGGATCTTTACAATGACAACTTTTTGGAgttagtcttc ... aacttttcagTGATTATAAGAGAATGGATGAAGCTGACCAGTTCGAATCGTTTGGGCTGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACGAGGCTTCCGTCGATCCCGATATCGTACGAGACGAAATCGAAGAACAACCCGAGGAAGAAGAAGATGGAGAGGATCTTTACAATGACAACTTTTTGGAgttagtcttctgtttttactttctctttttccatctcctcggaaaaccctaattcatttggcccttacaacttttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT